CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g07430

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g07430 830634 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM S.X. H.G.
0.80 89.8 At4g35010 829653 BGAL11 (beta-galactosidase 11) putative beta-galactosidase (BGAL11 gene) S.X. H.G.
0.78 88.6 At3g01270 821142 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO S.X. H.G.
0.78 88.6 At3g28750 822507 unknown protein F:unknown;P:unknown;C:endomembrane system;PO S.X. H.G.
0.74 86.1 At3g62170 825390 VGDH2 (Vanguard 1 homolog 2) F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.74 86.1 At5g14380 831289 AGP6 (Arabinogalactan proteins 6) Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth. S.X. H.G.
0.74 86.1 At5g19580 832078 glyoxal oxidase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPO S.X. H.G.
0.73 85.5 At3g07820 819973 polygalacturonase 3 (PGA3) / pectinase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.67 81.6 At3g13400 820540 sks13 (SKU5 Similar 13) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA S.X. H.G.
0.60 75.7 At1g55570 842006 sks12 (SKU5 Similar 12) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
205.0 100.0 E-ATMX-35-raw-cel-1574334848
172.0 100.0 E-ATMX-35-raw-cel-1574334864
155.7 99.9 E-MEXP-1138-raw-cel-1432772746
135.4 99.9 E-MEXP-1138-raw-cel-1432772874
125.3 99.9 E-MEXP-1138-raw-cel-1432772778
124.0 99.9 E-MEXP-1138-raw-cel-1432773098
118.0 99.9 E-MEXP-1138-raw-cel-1432772810
117.4 99.9 E-MEXP-1138-raw-cel-1432773130
117.0 99.9 E-MEXP-1138-raw-cel-1432772842
116.1 99.9 E-MEXP-1138-raw-cel-1432772938
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 2e-151 535 At5g07420 830633 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.31 3e-18 93 At5g07410 830632 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.22 2e-13 77 At1g69940 843331 PPME1 Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers. C.G. S.X.
0.24 9e-9 61 At5g61680 836290 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 1e-1 38 At1g05310 837030 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;MPOBFVA C.G. S.X.
0.01 5e-1 36 At5g54520 835540 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOBPA C.G. S.X.
0.02 5e-1 36 At5g48020 834853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFM C.G. S.X.
0.02 5e-1 36 At5g52830 835360 WRKY27 Encodes a WRKY transcription factor WRKY27. Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum. C.G. S.X.
0.02 5e-1 36 At3g19200 821454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Glycine max GmaAffx.34291.1.A1_at BE822401 - - 3e-1 At5g07430 pectinesterase family protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HVSMEm0007F22r2_at HVSMEm0007F22r2 - - 2e+0 At2g29300 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.02 1e+0 36 Oryza sativa OsAffx.12206.1.S1_at - - - 0 C.G. S.X.
0.08 3e-6 54 Populus trichocarpa PtpAffx.224999.1.S1_at pmrna43974 hypothetical protein - 3e-6 At5g07430 pectinesterase family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.82031.2.S1_at CA680528 - - 4e-3 At3g02970 EXL6 (EXORDIUM LIKE 6) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1616401_at CF213677 hypothetical protein LOC100263582 - 4e-1 At5g07430 pectinesterase family protein C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.583.1.A1_at AI714946 ubiquitin-like protein SMT3 - 3e+0 At3g21338 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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