Gene omics information

Query gene ID At5g07420
Gene name pectinesterase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4659.8At5g07420830633pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMS.X.H.G.
0.8994.6At2g48150819427ATGPX4 (GLUTATHIONE PEROXIDASE 4)Encodes glutathione peroxidase.S.X.H.G.
0.8391.4At4g00350827306MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAS.X.H.G.
0.7788.0At3g46520823805ACT12 (ACTIN-12)Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development.S.X.H.G.
0.6378.1At1g24620839076polcalcin, putative / calcium-binding pollen allergen, putativeF:calcium ion binding;P:response to cold;C:nucleus;MFPOBVS.X.H.G.
0.6176.7At1g67290843049glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
220.4100.0E-MEXP-1138-raw-cel-1432773258
215.1100.0E-MEXP-1138-raw-cel-1432773322
210.4100.0GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
205.4100.0E-MEXP-1138-raw-cel-1432773290
174.3100.0E-MEXP-1138-raw-cel-1432773226
173.8100.0E-MEXP-1138-raw-cel-1432773354
168.9100.0E-MEXP-1138-raw-cel-1432773194
161.799.9E-MEXP-1138-raw-cel-1432773386
160.499.9E-MEXP-1138-raw-cel-1432773162
138.999.9E-MEXP-1138-raw-cel-1432772618
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.752e-151535At5g07430830634pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMC.G.S.X.
0.362e-28127At5g07410830632pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMC.G.S.X.
0.343e-27123At1g69940843331PPME1Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers.C.G.S.X.
0.282e-25117At5g61680836290pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMC.G.S.X.
0.022e-344At1g53840841821ATPME1encodes a pectin methylesteraseC.G.S.X.
0.033e-240At5g19730832093pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:cell wall, cytoplasm, plant-type cell wall;PBFMC.G.S.X.
0.021e-138At4g32040829335KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone.C.G.S.X.
0.025e-136At5g57510835855unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.025e-136At3g19200821454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.038e-136Glycine maxGmaAffx.73180.1.S1_atBI700322--8e-5At4g00190pectinesterase family proteinC.G.S.X.
0.023e-136Hordeum vulgareContig17112_atContig17112--9e-1At1g47655Dof-type zinc finger domain-containing proteinC.G.S.X.
0.022e-242Oryza sativaOsAffx.29137.1.S1_at---0C.G.S.X.
0.081e-242Populus trichocarpaPtpAffx.225439.1.S1_atpmrna44788hypothetical protein-5e-3At5g07420pectinesterase family proteinC.G.S.X.
0.036e-136Triticum aestivumTaAffx.55665.2.S1_atCA662960--2e-1At5g07420pectinesterase family proteinC.G.S.X.
0.033e+032Vitis vinifera1608678_atCD005439--9e+0At5g07420pectinesterase family proteinC.G.S.X.
0.024e+032Zea maysZm.14789.2.S1_a_atBM380358hypothetical protein LOC100193117 /// hypothetical protein LOC100279921-3e-1At4g15150glycine-rich proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00400Link to KaPPA-View 4Homogalacturonan degradation
00422Link to KaPPA-View 4Carbohydrate esterases
00442Link to KaPPA-View 4Rhamnogalacturonan II degradation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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