Gene omics information

Query gene ID At5g07400
Gene name forkhead-associated domain-containing protein / FHA domain-containing protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.168.8At5g07400830631forkhead-associated domain-containing protein / FHA domain-containing proteinF:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, phosphoric diester hydrolase activity, zinc ion binding, nucleic acid binding;P:DNA repair;C:nucleus;MFOPBS.X.H.G.
0.5065.3At1g14770838042protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMFOS.X.H.G.
0.4050.8At4g33990829546EMB2758 (embryo defective 2758)F:unknown;P:embryonic development ending in seed dormancy;C:mitochondrion;POMFBS.X.H.G.
0.2930.3At1g16800838251tRNA-splicing endonuclease positive effector-relatedF:poly(U) binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVAS.X.H.G.
0.2930.3At1g49940841417-F:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
248.1100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
227.1100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
210.1100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-138At5g37560833734zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.014e-138At5g57590835863BIO1 (biotin auxotroph 1)Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.C.G.S.X.
0.012e+036At5g53080835388kinesin light chain-relatedF:binding;P:unknown;C:chloroplast;MBFOPAVC.G.S.X.
0.012e+036At5g55540835648TRN1 (TORNADO 1)Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway.C.G.S.X.
0.012e+036At5g64430836564octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;MPFOBVAC.G.S.X.
0.012e+036At4g21130827861EMB2271 (EMBRYO DEFECTIVE 2271)similar to man and yeast U3-55K genes, involved in processing of pre-ribosomal RNA.C.G.S.X.
0.012e+036At3g42670823287CHR38 (CHROMATIN REMODELING 38)Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced.C.G.S.X.
0.012e+036At3g03770821164leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.012e+036At2g31550817713GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;PBFOMC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-140Glycine maxGmaAffx.12504.1.S1_atBE440616--9e-1At2g05910unknown proteinC.G.S.X.
0.018e-136Hordeum vulgareContig15040_atContig15040--1e+0At5g36920unknown proteinC.G.S.X.
0.025e-552Oryza sativaOs04g0403400AK120071.1-Conserved hypothetical protein3e-5At5g07400forkhead-associated domain-containing protein / FHA domain-containing proteinC.G.S.X.
0.123e-965Populus trichocarpaPtpAffx.210714.1.S1_atpmrna21017hypothetical protein-2e-9At5g07400forkhead-associated domain-containing protein / FHA domain-containing proteinC.G.S.X.
0.012e+036Triticum aestivumTa.15977.1.S1_atCA502660--1e+1At5g62950catalytic/ nucleotide bindingC.G.S.X.
0.012e+034Vitis vinifera1621807_atCF568822--1e-27At2g29400TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)C.G.S.X.
0.022e-138Zea maysZm.18903.1.A1_atCO530915--7e-2At5g07400forkhead-associated domain-containing protein / FHA domain-containing proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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