CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g07390

Gene name ATRBOHA (respiratory burst oxidase homolog A)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At5g07390 830630 ATRBOHA (respiratory burst oxidase homolog A) F:calcium ion binding;P:defense response;C:intrinsic to plasma membrane;MFPOBA S.X. H.G.
0.50 65.3 At4g37340 829889 CYP81D3 member of CYP81D S.X. H.G.
0.43 55.3 At1g68940 843228 armadillo/beta-catenin repeat protein-related / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFV S.X. H.G.
0.40 50.8 At4g11230 826725 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOA S.X. H.G.
0.38 46.7 At2g28970 817446 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
135.0 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
125.6 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
100.5 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
87.5 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
84.4 99.9 E-MEXP-828-raw-cel-1156922342
70.4 99.9 E-MEXP-828-raw-cel-1156922809
68.4 99.9 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
68.2 99.9 E-MEXP-828-raw-cel-1156922296
67.8 99.9 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
66.1 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.26 2e-15 85 At5g51060 835179 RHD2 (ROOT HAIR DEFECTIVE 2) RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx. C.G. S.X.
0.19 6e-12 73 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA C.G. S.X.
0.06 6e-9 63 At1g19230 838506 respiratory burst oxidase protein E (RbohE) / NADPH oxidase F:in 7 functions;P:defense response;C:integral to membrane, membrane;MFPBOA C.G. S.X.
0.05 2e-5 52 At1g64060 842710 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. C.G. S.X.
0.03 9e-5 50 At1g09090 837430 ATRBOHB (respiratory burst oxidase homolog B) F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBA C.G. S.X.
0.07 4e-4 48 At5g47910 834842 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. C.G. S.X.
0.03 4e-4 48 At5g60010 836123 FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidase F:in 8 functions;P:oxidation reduction;C:integral to membrane, membrane;MPFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 5e-7 57 Glycine max Gma.2688.3.S1_a_at BE555952 - - 7e-8 At5g07390 ATRBOHA (respiratory burst oxidase homolog A) C.G. S.X.
0.07 1e-5 52 Hordeum vulgare Contig8302_at Contig8302 - - 1e-5 At1g09090 ATRBOHB (respiratory burst oxidase homolog B) C.G. S.X.
0.07 1e-11 73 Oryza sativa Os.11468.1.S1_at - - - 0 C.G. S.X.
0.16 2e-9 65 Populus trichocarpa PtpAffx.200276.1.S1_s_at pmrna544 hypothetical protein - 3e-26 At5g47910 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) C.G. S.X.
0.08 7e-15 83 Triticum aestivum Ta.27544.1.A1_at BT009119.1 - - 1e-15 At5g07390 ATRBOHA (respiratory burst oxidase homolog A) C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1612450_at CA811242 hypothetical protein LOC100255989 - 6e-90 At2g06530 VPS2.1 C.G. S.X.
0.07 3e-15 83 Zea mays Zm.6657.1.A1_at BM382361 Respiratory burst oxidase-like protein D - 3e-15 At5g07390 ATRBOHA (respiratory burst oxidase homolog A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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