CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g07130

Gene name LAC13 (laccase 13)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g07130 830604 LAC13 (laccase 13) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
0.82 90.9 At2g43390 818940 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At5g09520 830811 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA S.X. H.G.
0.72 84.8 At2g22510 816784 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFA S.X. H.G.
0.70 83.5 At5g13580 831202 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV S.X. H.G.
0.67 81.6 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV S.X. H.G.
0.67 81.6 At5g09530 830812 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA S.X. H.G.
0.64 78.9 At1g68850 843218 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.59 74.7 At4g36610 829813 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA S.X. H.G.
0.43 55.3 At4g38080 829964 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
595.4 100.0 E-MEXP-828-raw-cel-1156922634
261.1 100.0 E-MEXP-828-raw-cel-1156922659
255.2 100.0 E-MEXP-828-raw-cel-1156922684
247.8 100.0 E-MEXP-828-raw-cel-1156922438
147.3 99.9 E-MEXP-828-raw-cel-1156922416
145.6 99.9 E-MEXP-828-raw-cel-1156922386
124.8 99.9 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
100.7 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
98.2 99.9 E-MEXP-828-raw-cel-1156922968
89.2 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 2e-11 71 At2g30210 817571 LAC3 (laccase 3) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
0.03 4e-9 63 At2g29130 817462 LAC2 (laccase 2) putative laccase, knockout mutant had reduced root elongation under PEG-induced dehydration C.G. S.X.
0.14 4e-6 54 At5g05390 830421 LAC12 (laccase 12) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
0.06 9e-4 46 At2g40370 818630 LAC5 (laccase 5) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
0.01 3e-3 44 At5g01050 831812 laccase family protein / diphenol oxidase family protein putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
0.03 2e-1 38 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
0.01 2e-1 38 At1g66200 842935 ATGSR2 encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium C.G. S.X.
0.02 8e-1 36 Atcg01300 - - One of two chloroplast genes that encode chloroplast ribosomal protein L23, a constituent of the large subunit of the ribosomal complex C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-4 48 Glycine max Gma.8441.1.S1_at AY113187.2 diphenol oxidase laccase - 1e-18 At5g05390 LAC12 (laccase 12) C.G. S.X.
0.04 4e-1 36 Hordeum vulgare Contig15387_at Contig15387 - - 3e-2 At2g40370 LAC5 (laccase 5) C.G. S.X.
0.07 3e-5 52 Oryza sativa Os01g0827300 AK071929.1 - Laccase precursor (EC 1.10.3.2) 7e-5 At2g30210 LAC3 (laccase 3) C.G. S.X.
0.10 9e-14 79 Populus trichocarpa PtpAffx.11941.1.A1_at CV245871 - - 3e-14 At5g07130 LAC13 (laccase 13) C.G. S.X.
0.04 2e-1 38 Triticum aestivum Ta.26241.1.A1_at CD491640 - - 1e-1 At5g07130 LAC13 (laccase 13) C.G. S.X.
0.08 6e-2 38 Vitis vinifera 1611641_at CB974655 hypothetical protein LOC100258642 - 7e-2 At5g07130 LAC13 (laccase 13) C.G. S.X.
0.02 2e+0 34 Zea mays ZmAffx.1018.1.A1_at AI881527 - - 5e-2 At1g58420 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0046274 The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units.
L GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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