CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g07030

Gene name aspartic-type endopeptidase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.77 88.0 At5g07030 830594 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:cell wall, plant-type cell wall;PMFO S.X. H.G.
0.63 78.1 At5g51560 835230 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.57 73.8 At3g17840 821053 RLK902 Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown. S.X. H.G.
0.55 70.6 At4g03210 828024 XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers. S.X. H.G.
0.53 68.6 At3g56370 824804 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.53 68.6 At2g05790 815130 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO S.X. H.G.
0.52 67.4 At3g15680 820811 zinc finger (Ran-binding) family protein F:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOFB S.X. H.G.
0.47 61.2 At4g34160 829564 CYCD3 encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1. S.X. H.G.
0.46 59.8 At5g11550 831027 binding F:binding;P:biological_process unknown;C:chloroplast;PMFOBV S.X. H.G.
0.41 52.4 At5g61130 836234 PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1) Encodes a plasmodesmatal localized protein with callose binding activity. The function of PDCB1 is unknown but overexpression leads to the hyperaccumulation of callose. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.0 99.7 E-MEXP-265-raw-cel-414617783
24.3 99.6 E-MEXP-1246-raw-cel-1504120261
20.3 99.6 E-MEXP-1246-raw-cel-1504120171
19.4 99.6 E-MEXP-265-raw-cel-414617890
19.1 99.6 E-MEXP-682-raw-cel-922397696
19.0 99.5 E-TABM-19-raw-cel-489757278
19.0 99.5 GSM133920 Weigel_2-12_CHIP-206-C_Rep3_ATH1 GSE5746 FRI FLC combos
18.6 99.5 E-MEXP-728-raw-cel-1062074718
17.9 99.5 GSM62701 arf6/arf6 ARF8/arf8_stem GSE2848 Auxin Response Factor mediated flower gene expression
17.6 99.5 E-MEXP-1246-raw-cel-1504120201
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 8e-16 85 At3g54400 824606 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast, cell wall, chloroplast, plant-type cell wall;PMFO C.G. S.X.
0.02 4e-2 40 At1g77010 844037 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMF C.G. S.X.
0.01 2e-1 38 At3g09650 820122 HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152) RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit. C.G. S.X.
0.01 7e-1 36 At5g58410 835954 binding / protein binding / zinc ion binding F:protein binding, binding, zinc ion binding;P:unknown;C:unknown;MFOPB C.G. S.X.
0.01 7e-1 36 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. C.G. S.X.
0.01 3e+0 34 At5g52430 835319 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA C.G. S.X.
0.02 3e+0 34 At5g61650 836287 CYCP4 The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei. C.G. S.X.
0.01 3e+0 34 At5g47250 834772 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:mitochondrion;PMBOFA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 38 Glycine max Gma.308.1.S1_at CD414058 - - 6e-5 At3g54400 aspartyl protease family protein C.G. S.X.
0.06 4e-7 56 Hordeum vulgare Contig13984_at Contig13984 - - 6e-7 At5g07030 aspartic-type endopeptidase C.G. S.X.
0.09 2e-8 61 Oryza sativa Os07g0658600 CK738634 - Radc1 1e-8 At5g07030 aspartic-type endopeptidase C.G. S.X.
0.02 9e-1 36 Populus trichocarpa PtpAffx.212576.1.S1_at pmrna24636 hypothetical protein - 3e-1 At4g36010 pathogenesis-related thaumatin family protein C.G. S.X.
0.08 7e-4 46 Triticum aestivum Ta.1953.3.S1_a_at CK211170 - - 3e-4 At5g07030 aspartic-type endopeptidase C.G. S.X.
0.16 9e-7 54 Vitis vinifera 1606471_at CF372161 hypothetical protein LOC100244589 - 3e-6 At5g07030 aspartic-type endopeptidase C.G. S.X.
0.03 2e-8 59 Zea mays Zm.1133.1.S1_at BM382336 hypothetical protein LOC100191400 - 6e-8 At5g07030 aspartic-type endopeptidase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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