CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g07020

Gene name proline-rich family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At5g07020 830593 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVO S.X. H.G.
0.50 65.3 At1g19150 838498 LHCA6 PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA, S.X. H.G.
0.50 65.3 At1g74730 843812 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO S.X. H.G.
0.50 65.3 At5g08050 830699 - F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PO S.X. H.G.
0.40 50.8 At1g14150 837974 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;P S.X. H.G.
0.35 41.6 At3g04790 819639 ribose 5-phosphate isomerase-related F:ribose-5-phosphate isomerase activity;P:defense response to bacterium, reductive pentose-phosphate cycle;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;BOAFMP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.1 99.3 GSM268008 Col-0, Time 0, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
9.7 99.1 GSM268009 Col-0, Time 0, rep-B GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
8.1 98.9 GSM268010 Col-0, Time 0, rep-C GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
7.8 98.9 E-MEXP-449-raw-cel-676423095
7.7 98.9 E-MEXP-449-raw-cel-676423036
7.1 98.8 GSM151696 Col-0 uninoculated, biological replicate 3 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
7.0 98.7 GSM268248 WT-ck-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
7.0 98.7 GSM269490 mkk2, no-treatment, rep-C GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
6.9 98.7 E-MEXP-449-raw-cel-676422999
6.8 98.7 GSM269488 mkk2, no-treatment, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 9e-2 38 At2g47650 819378 UXS4 (UDP-XYLOSE SYNTHASE 4) encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. C.G. S.X.
0.01 3e-1 36 At1g55200 841963 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.02 1e+0 34 At5g58660 835980 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
0.02 1e+0 34 At5g56190 835718 WD-40 repeat family protein F:unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPA C.G. S.X.
0.01 1e+0 34 At4g34950 829647 nodulin family protein F:unknown;P:unknown;C:unknown;OBPFAM C.G. S.X.
0.02 1e+0 34 At3g19090 821444 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPOFB C.G. S.X.
0.01 1e+0 34 At3g55160 824682 - F:unknown;P:unknown;C:unknown;MFOP C.G. S.X.
0.04 1e+0 34 At2g23120 816844 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-4 46 Glycine max Gma.11910.1.S1_at BF598192 - - 2e-4 At5g07020 proline-rich family protein C.G. S.X.
0.03 7e-1 34 Hordeum vulgare HV06K05u_s_at HV06K05u - - 2e-1 At2g43400 ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase) C.G. S.X.
0.03 3e-3 44 Oryza sativa Os04g0577800 AU182546 - Protein of unknown function UPF0136 family protein 4e-1 At2g22170 lipid-associated family protein C.G. S.X.
0.08 2e-9 63 Populus trichocarpa Ptp.5374.1.A1_at CV277637 hypothetical protein - 2e-9 At5g07020 proline-rich family protein C.G. S.X.
0.03 2e+1 30 Triticum aestivum TaAffx.85585.1.S1_at CA621375 - - 4e+0 At4g13440 calcium-binding EF hand family protein C.G. S.X.
0.20 1e-10 65 Vitis vinifera 1620660_at CF517134 hypothetical protein LOC100259089 - 6e-10 At5g07020 proline-rich family protein C.G. S.X.
0.03 6e-1 34 Zea mays Zm.15117.1.A1_at BM078934 hypothetical protein LOC100275879 - 4e+0 At1g52827 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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