CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g06980

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At5g06980 830589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
0.75 86.9 At3g12320 820411 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.67 81.6 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. S.X. H.G.
0.57 73.8 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. S.X. H.G.
0.50 65.3 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.7 99.7 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
36.3 99.7 GSM142642 MC002_ATH1_A7.2-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
32.9 99.7 GSM253158 4h into an extended nightA GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
32.2 99.7 E-ATMX-33-raw-cel-1562596288
30.9 99.7 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.1 99.7 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
28.0 99.7 GSM142641 MC002_ATH1_A7.1-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
27.7 99.7 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
27.2 99.7 GSM253157 2h into an extended night GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
26.7 99.7 GSM77177 04h low CO2 + dark replicate A GSE3423 Carbon fixation (endogenous sugar) and light-dependent gene expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.38 8e-21 101 At3g12320 820411 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.02 4e-1 36 At5g22830 832346 ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10) putative Mg(2+) transport protein C.G. S.X.
0.02 4e-1 36 At4g17490 827463 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.02 4e-1 36 At3g14930 820722 HEME1 F:uroporphyrinogen decarboxylase activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast;OBMFAP C.G. S.X.
0.02 4e-1 36 At2g25190 817057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF C.G. S.X.
0.03 4e-1 36 At1g73607 3767693 LCR65 (Low-molecular-weight cysteine-rich 65) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-1 38 Glycine max GmaAffx.52995.1.S1_at BG156758 - - 7e-2 At5g06980 unknown protein C.G. S.X.
0.02 8e-1 34 Hordeum vulgare Contig8058_at Contig8058 - - 5e+0 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) C.G. S.X.
0.02 2e-1 38 Oryza sativa Os01g0274800 AK107461.1 - The start codon is not identified. 2e-7 At1g26780 myb family transcription factor (MYB117) C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.221846.1.S1_s_at pmrna38930 - - 5e-2 Atmg00550 - C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.26634.1.S1_at CA686921 - - 6e-1 At3g55646 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1617429_at CF405460 hypothetical protein LOC100245553 - 3e-1 At1g11570 nuclear transport factor 2 (NTF2), putative C.G. S.X.
0.02 7e-1 34 Zea mays Zm.2965.1.S1_at AY111160.1 - - 3e-2 At3g27810 ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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