CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g06950

Gene name AHBP-1B

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.76 87.4 At5g06950 830586 AHBP-1B Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment. S.X. H.G.
0.58 73.8 At5g51340 835208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB S.X. H.G.
0.52 67.4 At4g24560 828558 UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16) Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. S.X. H.G.
0.50 65.3 At1g33980 840295 Smg-4/UPF3 family protein Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD) S.X. H.G.
0.50 65.3 At1g09730 837501 Ulp1 protease family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.50 65.3 At3g15120 820743 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAV S.X. H.G.
0.50 65.3 At5g06120 830499 Ran-binding protein, putative F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOP S.X. H.G.
0.49 63.5 At2g25760 817118 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA S.X. H.G.
0.49 63.5 At1g54490 841891 XRN4 (EXORIBONUCLEASE 4) Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing. S.X. H.G.
0.48 62.5 At1g16710 838242 HAC12 (histone acetyltransferase of the CBP family 12) Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.6 99.8 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
45.5 99.8 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
42.0 99.8 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
38.2 99.8 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
37.5 99.7 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
36.8 99.7 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
33.0 99.7 GSM133959 Fukuda_1-4_2B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
31.7 99.7 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
31.0 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
29.6 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.86 0 882 At3g12250 820405 TGA6 (TGACG MOTIF-BINDING FACTOR 6) basic leucine zipper transcription factor involved in the activation of SA-responsive genes. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 1e-14 81 Glycine max Gma.7757.1.S1_at BG510691 transcription factor bZIP95 - 1e-14 At5g06950 AHBP-1B C.G. S.X.
0.20 3e-13 75 Hordeum vulgare Contig5907_at Contig5907 - - 3e-9 At5g06960 OBF5 (OCS-ELEMENT BINDING FACTOR 5) C.G. S.X.
0.17 5e-15 83 Oryza sativa Os03g0318600 AB051294.1 - Transcription factor HBP-1b(c38) 4e-15 At5g06950 AHBP-1B C.G. S.X.
0.53 5e-48 192 Populus trichocarpa Ptp.1505.1.S1_a_at CK092007 hypothetical protein - 3e-40 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) C.G. S.X.
0.11 6e-7 56 Triticum aestivum Ta.23670.1.S1_at CA705573 transcription factor HBP-1b(c1) - 5e-8 At1g68640 PAN (PERIANTHIA) C.G. S.X.
0.09 2e-19 95 Vitis vinifera 1608352_at CB978000 similar to TGA-type basic leucine zipper protein TGA2.1 - 1e-19 At5g06960 OBF5 (OCS-ELEMENT BINDING FACTOR 5) C.G. S.X.
0.12 4e-9 61 Zea mays Zm.19119.1.A1_at CO521073 hypothetical protein LOC100274089 - 1e-11 At1g68640 PAN (PERIANTHIA) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009410 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms.
S GO:0009862 The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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