CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g06930

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At5g06930 830584 - F:unknown;P:unknown;C:chloroplast;OMBFPVA S.X. H.G.
0.73 85.5 At5g14090 831258 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.55 70.6 At2g40120 818603 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytoplasm;MOPFBVA S.X. H.G.
0.33 38.1 At1g27440 839635 GUT2 F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:endomembrane system, membrane;PMOBF S.X. H.G.
0.33 38.1 At2g31900 817748 XIF Encodes an novel myosin isoform. S.X. H.G.
0.25 22.6 At2g41610 818759 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
101.9 99.9 E-MEXP-265-raw-cel-414618585
97.4 99.9 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
84.8 99.9 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
81.7 99.9 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
79.9 99.9 E-MEXP-265-raw-cel-414618693
79.6 99.9 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
63.1 99.8 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
57.8 99.8 E-MEXP-265-raw-cel-414618491
54.2 99.8 E-MEXP-265-raw-cel-414618796
50.8 99.8 E-MEXP-265-raw-cel-414618291
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 2e-8 61 At3g57780 824947 - F:unknown;P:unknown;C:unknown;OMFBPVA C.G. S.X.
0.03 1e-3 46 At2g42320 818833 nucleolar protein gar2-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA C.G. S.X.
0.01 4e-3 44 At3g20680 821615 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.01 2e-2 42 At5g43230 834341 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB C.G. S.X.
0.01 2e-2 42 At3g61680 825341 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBM C.G. S.X.
0.01 2e-2 42 At1g45110 841078 tetrapyrrole methylase family protein F:methyltransferase activity;P:metabolic process;C:unknown;BOAPFM C.G. S.X.
0.01 7e-2 40 At5g59760 836097 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-7 59 Glycine max GmaAffx.71462.1.S1_at BM308753 - - 5e-6 At5g43230 unknown protein C.G. S.X.
0.01 9e-3 42 Hordeum vulgare Contig16468_at Contig16468 - - 8e-6 At2g42320 nucleolar protein gar2-related C.G. S.X.
0.02 4e-2 42 Oryza sativa Os.7004.1.S1_at - - - 0 C.G. S.X.
0.06 1e-1 40 Populus trichocarpa PtpAffx.95502.1.A1_at CV243613 hypothetical protein - 2e-2 At5g06930 - C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.105010.1.S1_at CA741557 - - 4e+0 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) C.G. S.X.
0.04 4e-10 65 Vitis vinifera 1606524_at CB979170 hypothetical protein LOC100266440 - 2e-19 At3g01810 - C.G. S.X.
0.05 3e-2 40 Zea mays Zm.2972.1.A1_at BM073882 - - 4e-3 At3g01810 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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