CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g06720

Gene name peroxidase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At5g06720 830561 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV S.X. H.G.
0.40 50.8 At5g05340 830416 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM S.X. H.G.
0.40 50.8 At5g52390 835315 photoassimilate-responsive protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.33 38.1 At1g16950 838266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.33 38.1 At1g68320 843161 MYB62 (myb domain protein 62) putative transcription factor: R2R3-MYB transcription family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
374.5 100.0 E-MEXP-1474-raw-cel-1593932929
355.5 100.0 E-MEXP-1474-raw-cel-1593932865
319.5 100.0 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
272.0 100.0 E-MEXP-1474-raw-cel-1593932801
257.4 100.0 GSM133958 Fukuda_1-3_2A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
241.4 100.0 GSM133959 Fukuda_1-4_2B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
230.4 100.0 E-MEXP-1474-raw-cel-1593932833
196.1 100.0 E-MEXP-1474-raw-cel-1593932769
182.1 100.0 E-MEXP-1474-raw-cel-1593932897
135.7 99.9 GSM142907 WW002_ATH1_A2-willa-ISOX-REP3 GSE6181 Assembly of the cell wall pectic matrix.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 0 862 At5g06730 830562 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBM C.G. S.X.
0.04 2e-9 63 At4g08770 826447 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POF C.G. S.X.
0.04 2e-9 63 At4g08780 826448 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM C.G. S.X.
0.05 3e-8 59 At2g38380 818419 peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase E F:electron carrier activity, peroxidase activity, heme binding;P:response to salt stress;C:plant-type cell wall;PFO C.G. S.X.
0.05 3e-8 59 At2g38390 818420 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to salt stress;C:endomembrane system;PFO C.G. S.X.
0.04 5e-7 56 At3g49110 824072 PRXCA (PEROXIDASE CA) Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response. C.G. S.X.
0.04 2e-6 54 At4g16270 827322 peroxidase 40 (PER40) (P40) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM C.G. S.X.
0.05 3e-5 50 At2g22420 816773 peroxidase 17 (PER17) (P17) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB C.G. S.X.
0.07 5e-4 46 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-5 50 Glycine max GmaAffx.89697.1.S1_s_at CK606333 Peroxidase precursor (GMIPER1) - 2e-5 At5g06720 peroxidase, putative C.G. S.X.
0.05 4e-6 52 Hordeum vulgare Contig12070_at Contig12070 - - 1e-5 At1g68850 peroxidase, putative C.G. S.X.
0.03 1e-3 46 Oryza sativa Os01g0172600 AK058554.1 - Peroxidase 25 precursor (EC 1.11.1.7) (AtperoxP25) 2e-10 At2g41480 electron carrier/ heme binding / peroxidase C.G. S.X.
0.10 2e-10 67 Populus trichocarpa PtpAffx.25548.2.S1_at D30653.1 hypothetical protein - 2e-4 At4g08780 peroxidase, putative C.G. S.X.
0.03 8e+0 32 Triticum aestivum TaAffx.8730.1.S1_at CA620984 - - 1e-6 At3g21770 peroxidase 30 (PER30) (P30) (PRXR9) C.G. S.X.
0.03 2e-3 42 Vitis vinifera 1609321_at CA817974 hypothetical protein LOC100241916 - 7e-7 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
0.06 9e-4 44 Zea mays Zm.3573.1.A1_at CF629925 peroxidase 54 - 3e-3 At5g06720 peroxidase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00413 Peroxidase, class III

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00360 Phenylalanine metabolism
00680 Methane metabolism
00940 Phenylpropanoid biosynthesis
01061 Biosynthesis of phenylpropanoids
01100 Metabolic pathways
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