CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g06630

Gene name proline-rich extensin-like family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At5g06630 830551 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA S.X. H.G.
0.89 94.6 At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA S.X. H.G.
0.89 94.6 At2g24980 817037 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA S.X. H.G.
0.89 94.6 At5g06640 830552 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA S.X. H.G.
0.86 93.1 At4g08410 826400 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
174.5 100.0 E-MEXP-722-raw-cel-1062243559
99.2 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
93.8 99.9 E-MEXP-722-raw-cel-1062243429
92.7 99.9 E-MEXP-722-raw-cel-1062242948
87.6 99.9 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
83.8 99.9 GSM157306 Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
82.9 99.9 E-MEXP-722-raw-cel-1062243516
80.9 99.9 E-MEXP-722-raw-cel-1062243470
68.5 99.9 GSM133894 Schroeder_1-12_JS44-starve-96h_Rep1_ATH1 GSE5744 Response to potassium starvation in roots
66.3 99.8 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.78 0 1564 At2g24980 817037 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA C.G. S.X.
0.66 0 1193 At4g08410 826400 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA C.G. S.X.
0.77 0 1154 At4g08400 826398 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:cellular_component unknown;MFPOBVA C.G. S.X.
0.69 0 1110 At5g06640 830552 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA C.G. S.X.
0.57 0 989 At3g54590 824624 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) Encodes a hydroxyproline-rich glycoprotein. C.G. S.X.
0.45 0 783 At3g28550 822485 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA C.G. S.X.
0.44 0 712 At3g54580 824623 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA C.G. S.X.
0.53 1e-134 480 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA C.G. S.X.
0.46 2e-115 416 At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-5 52 Glycine max GmaAffx.93270.1.S1_x_at CF808995 - - 2e-5 At1g26240 proline-rich extensin-like family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEa0006L09r2_s_at HVSMEa0006L09r2 - - 3e-1 At2g33830 dormancy/auxin associated family protein C.G. S.X.
0.02 2e-2 42 Oryza sativa Os12g0489300 AK071524.1 - Conserved hypothetical protein 2e-9 At1g29250 nucleic acid binding C.G. S.X.
0.14 6e-8 59 Populus trichocarpa PtpAffx.200833.1.S1_x_at pmrna1624 hypothetical protein - 1e-3 At1g26250 proline-rich extensin, putative C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.93369.1.S1_at BJ213884 - - 1e-1 At3g59400 GUN4 C.G. S.X.
0.07 3e-3 42 Vitis vinifera 1615789_at BQ795769 - - 1e-3 At1g26250 proline-rich extensin, putative C.G. S.X.
0.02 1e+0 34 Zea mays Zm.1200.1.S1_at AY105762.1 - - 9e-1 At5g06630 proline-rich extensin-like family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0009664 A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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