Gene omics information

Query gene ID At5g06300
Gene name carboxy-lyase
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At5g06300830518carboxy-lyaseF:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMAS.X.H.G.
0.6781.6At5g24290832496integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVAS.X.H.G.
0.6176.7At3g16460820894jacalin lectin family proteinF:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVAS.X.H.G.
0.5873.8At1g62660842563beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolarF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:vacuole;BPFOMAS.X.H.G.
0.5673.0At5g44380834464FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:cell wall;BFOPAMS.X.H.G.
0.5570.6At2g22770816807NAI1regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica.S.X.H.G.
0.5570.6At4g21600828246ENDO5 (endonuclease 5)Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).S.X.H.G.
0.5267.4At4g27860828899integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBFS.X.H.G.
0.4659.8At2g36380818211PDR6F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVS.X.H.G.
0.4050.8At5g26280832697meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PFOMS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
49.999.8GSM133126S0_2H_BGSE5688AtGenExpress: Response to sulfate limitation
46.999.8GSM75509Col-0 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
41.899.8GSM133125S0_2H_AGSE5688AtGenExpress: Response to sulfate limitation
38.199.8GSM133138S1500_2H_BGSE5688AtGenExpress: Response to sulfate limitation
35.999.7GSM231203chl1 at T0.5, biological rep2GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
35.099.7GSM75513Col-0 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
34.899.7GSM176880AWP_Control_2GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
34.499.7GSM179974Arabidopsis roots, IAA treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
33.699.7GSM142672SF001_ATH1_A2-Fille-WT-+dexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
29.699.7GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.612e-39163At2g35990818172-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFMAC.G.S.X.
0.371e-1687At2g37210818298-Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.C.G.S.X.
0.114e-1065At2g28305817376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAMC.G.S.X.
0.306e-961At3g53450824513unknown proteinF:molecular_function unknown;P:lysine biosynthetic process via diaminopimelate;C:cellular_component unknown;BOPFMAC.G.S.X.
0.041e-344At5g03270831890unknown proteinF:molecular_function unknown;P:lysine biosynthetic process via diaminopimelate;C:unknown;BOPFMAC.G.S.X.
0.012e-240At4g20720827820dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAVC.G.S.X.
0.012e-240At1g05090839327dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAVC.G.S.X.
0.021e+034At5g18320831950armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PFOMBVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.243e-30133Glycine maxGmaAffx.69905.1.A1_atBU550433--2e-18At2g35990-C.G.S.X.
0.162e-756Hordeum vulgareContig13074_atContig13074--1e-7At2g37210-C.G.S.X.
0.295e-1169Oryza sativaOs04g0518800AK069293.1--8e-31At2g37210-C.G.S.X.
0.295e-50198Populus trichocarpaPtp.4178.1.A1_atDN489267hypothetical protein-1e-10At2g37210-C.G.S.X.
0.075e-342Triticum aestivumTa.17851.1.S1_atCA624905--4e-3At5g06300carboxy-lyaseC.G.S.X.
0.192e-961Vitis vinifera1622860_atCA809326hypothetical protein LOC100256973-1e-81At2g28305unknown proteinC.G.S.X.
0.022e+032Zea maysZm.9679.1.A1_atBM340720--6e+0Atmg00400-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00079Link to KaPPA-View 4Lysine degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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