CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g06120

Gene name Ran-binding protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At5g06120 830499 Ran-binding protein, putative F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOP S.X. H.G.
0.83 91.4 At2g25760 817118 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA S.X. H.G.
0.80 89.8 At3g22170 821781 FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1. S.X. H.G.
0.73 85.5 At1g54490 841891 XRN4 (EXORIBONUCLEASE 4) Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing. S.X. H.G.
0.57 73.8 At5g18190 831937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA S.X. H.G.
0.55 70.6 At5g51340 835208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB S.X. H.G.
0.48 62.5 At2g27900 817335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.1 99.5 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
13.1 99.4 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.3 99.3 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.2 99.3 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.1 99.3 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
12.1 99.3 GSM133118 RIKEN-YAMAUCHI1B GSE5687 AtGenExpress: Different temperature treatment of seeds
12.1 99.3 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.9 99.3 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
11.5 99.3 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
11.2 99.2 GSM133958 Fukuda_1-3_2A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 40 At4g02800 828171 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA C.G. S.X.
0.01 4e-1 38 At5g45000 834531 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO C.G. S.X.
0.01 4e-1 38 At3g09790 820137 UBQ8 encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. C.G. S.X.
0.01 4e-1 38 At3g07140 819900 GPI transamidase component Gpi16 subunit family protein F:GPI-anchor transamidase activity;P:biological_process unknown;C:endoplasmic reticulum;MFPO C.G. S.X.
0.00 4e-1 38 At3g48770 824038 ATP binding / DNA binding F:DNA binding, ATP binding;P:biological_process unknown;C:chloroplast;PMBOFA C.G. S.X.
0.01 2e+0 36 At3g10930 820264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P C.G. S.X.
0.01 2e+0 36 At3g19280 821462 FUT11 (FUCOSYLTRANSFERASE 11) Encodes a protein with core α1,3-fucosyltransferase activity. C.G. S.X.
0.00 2e+0 36 At2g25730 817114 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-17 93 Glycine max Gma.2089.2.S1_at AW186093 - - 2e-18 At5g06120 Ran-binding protein, putative C.G. S.X.
0.09 2e-7 57 Hordeum vulgare Contig8560_at Contig8560 - - 3e-7 At5g06120 Ran-binding protein, putative C.G. S.X.
0.15 9e-7 57 Oryza sativa Os03g0616700 CR291026 - Importin-beta, N-terminal domain containingprotein 4e-4 At5g06120 Ran-binding protein, putative C.G. S.X.
0.56 7e-96 353 Populus trichocarpa PtpAffx.203586.1.S1_at pmrna7118 hypothetical protein - 5e-96 At5g06120 Ran-binding protein, putative C.G. S.X.
0.08 5e-10 67 Triticum aestivum Ta.23305.1.S1_at CD910676 - - 3e-10 At5g06120 Ran-binding protein, putative C.G. S.X.
0.01 5e-1 36 Vitis vinifera 1622199_at CF514769 - - 2e+0 At4g13395 RTFL12 (ROTUNDIFOLIA LIKE 12) C.G. S.X.
0.01 7e-1 36 Zea mays Zm.857.1.S1_at CF624024 - - 1e-1 At5g50150 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0000059 The aggregation, arrangement and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins.
L GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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