CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g05790

Gene name myb family transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At5g05790 830464 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMO S.X. H.G.
0.67 81.6 At3g12090 820383 TET6 (TETRASPANIN6) Member of TETRASPANIN family S.X. H.G.
0.61 76.7 At1g31050 839991 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P S.X. H.G.
0.50 65.3 At3g47210 823874 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;PM S.X. H.G.
0.50 65.3 At4g24180 828519 - F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV S.X. H.G.
0.44 57.2 At5g35580 833523 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.39 48.4 At3g49860 824148 ATARLA1B (ADP-ribosylation factor-like A1B) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. S.X. H.G.
0.38 46.7 At3g27150 822334 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA S.X. H.G.
0.32 35.7 At3g21240 821678 4CL2 (4-COUMARATE:COA LIGASE 2) encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate. S.X. H.G.
0.31 33.8 At3g21770 821731 peroxidase 30 (PER30) (P30) (PRXR9) F:transferase activity, transferring glycosyl groups, peroxidase activity;P:response to oxidative stress;C:cell wall, nucleus, cytoplasm, plant-type cell wall;PFOBM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
97.9 99.9 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
78.2 99.9 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
78.0 99.9 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
73.0 99.9 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
69.6 99.9 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
61.0 99.8 GSM184495 Endodermis&Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
53.1 99.8 GSM184494 Endodermis&Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
49.8 99.8 GSM131277 AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
48.9 99.8 GSM184499 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
48.9 99.8 GSM131278 AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.57 1e-59 230 At3g11280 820299 myb family transcription factor Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay). C.G. S.X.
0.11 3e-14 79 At1g49010 841324 myb family transcription factor F:transcription factor activity, DNA binding;P:in 6 processes;C:unknown;PMOFBV C.G. S.X.
0.11 1e-10 67 At5g58900 836007 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF C.G. S.X.
0.04 7e-6 52 At5g23650 832430 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POBM C.G. S.X.
0.04 3e-5 50 At3g10580 820225 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF C.G. S.X.
0.04 1e-4 48 At5g47390 834786 myb family transcription factor F:transcription factor activity, DNA binding;P:in 8 processes;C:unknown;POFM C.G. S.X.
0.07 4e-4 46 At5g01200 831676 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 7e-16 85 Glycine max GmaAffx.6227.1.S1_at CA784006 - - 2e-26 At2g38090 myb family transcription factor C.G. S.X.
0.03 8e-1 34 Hordeum vulgare Contig7628_at Contig7628 - - 3e-12 At5g56840 DNA-binding family protein C.G. S.X.
0.06 5e-2 40 Oryza sativa Os04g0341900 9632.m02582 - - 3e-2 At5g05790 myb family transcription factor C.G. S.X.
0.10 4e-8 59 Populus trichocarpa PtpAffx.210452.1.S1_at pmrna20524 - - 1e-37 At1g49010 myb family transcription factor C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.97748.1.A1_at CA722274 - - 1e+0 At4g23610 unknown protein C.G. S.X.
0.23 8e-9 59 Vitis vinifera 1614932_at CF515425 hypothetical protein LOC100255200 - 3e-8 At5g05790 myb family transcription factor C.G. S.X.
0.04 7e-4 44 Zea mays Zm.9645.1.S1_at AY207047.1 ZmMybst1 - 1e-8 At3g16350 myb family transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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