CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g05780

Gene name RPN8A (RP NON-ATPASE SUBUNIT 8A)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At5g05780 830463 RPN8A (RP NON-ATPASE SUBUNIT 8A) Encodes a putative 26S proteasome subunit RPN8a. The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity. S.X. H.G.
0.89 94.6 At4g24820 828585 26S proteasome regulatory subunit, putative (RPN7) F:molecular_function unknown;P:protein catabolic process, ubiquitin-dependent protein catabolic process;C:nucleus, plasma membrane, proteasome regulatory particle, lid subcomplex, membrane;MFPO S.X. H.G.
0.89 94.6 At5g09900 830850 EMB2107 (EMBRYO DEFECTIVE 2107) Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects. S.X. H.G.
0.86 93.1 At1g20200 838609 EMB2719 (EMBRYO DEFECTIVE 2719) F:enzyme regulator activity;P:embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process;C:plasma membrane, proteasome regulatory particle, lid subcomplex;MFPO S.X. H.G.
0.86 93.1 At4g38630 830019 RPN10 (REGULATORY PARTICLE NON-ATPASE 10) Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.3 99.2 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
9.7 99.1 E-MEXP-739-raw-cel-1099467384
9.5 99.1 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
9.0 99.1 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
8.8 99.0 E-MEXP-739-raw-cel-1099467393
8.7 99.0 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
8.4 99.0 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
8.1 98.9 E-MEXP-739-raw-cel-1099467375
7.7 98.9 E-MEXP-739-raw-cel-1099467321
7.4 98.8 GSM265421 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.87 0 979 At3g11270 820298 MEE34 (maternal effect embryo arrest 34) F:molecular_function unknown;P:embryonic development ending in seed dormancy, protein catabolic process, ubiquitin-dependent protein catabolic process;C:nucleus, proteasome regulatory particle, lid subcomplex;MFPO C.G. S.X.
0.01 5e-1 36 At5g37830 833761 OXP1 (OXOPROLINASE 1) Encodes a 5-oxoprolinase that acts in the glutathione degradation pathway and in 5-oxoproline metabolism. C.G. S.X.
0.01 5e-1 36 At3g50010 824163 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PM C.G. S.X.
0.02 5e-1 36 At3g46100 823753 ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1) histidyl-tRNA synthetase C.G. S.X.
0.01 2e+0 34 At5g15980 831455 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBF C.G. S.X.
0.01 2e+0 34 At4g25120 828615 ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase F:ATP-dependent DNA helicase activity, hydrolase activity, DNA binding, ATP binding;P:DNA repair;C:unknown;BOFAPMV C.G. S.X.
0.01 2e+0 34 At4g03480 827906 protein binding F:protein binding;P:biological_process unknown;C:unknown;MOPFBVA C.G. S.X.
0.02 2e+0 34 At3g07880 819979 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO C.G. S.X.
0.01 2e+0 34 At2g37280 818305 PDR5 (PLEIOTROPIC DRUG RESISTANCE 5) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 4e-30 133 Glycine max Gma.5368.1.S1_at BQ627877 - - 2e-30 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
0.49 8e-69 260 Hordeum vulgare Contig3557_at Contig3557 - - 3e-68 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
0.41 4e-52 206 Oryza sativa Os04g0661900 AK103551.1 - - 8e-44 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
0.61 2e-108 393 Populus trichocarpa Ptp.1315.1.S1_at CV267551 hypothetical protein - 2e-108 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
0.36 1e-56 220 Triticum aestivum Ta.2207.1.S1_at CK200975 - - 2e-56 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
0.48 1e-115 414 Vitis vinifera 1612915_at CF212348 hypothetical protein LOC100247677 - 8e-115 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
0.40 5e-76 284 Zea mays Zm.477.2.A1_at AI737865 hypothetical protein LOC100274928 - 2e-75 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009965 The process by which the anatomical structures of the leaf are generated and organized. Morphogenesis pertains to the creation of form.
S GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
03050 Proteasome
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