Gene omics information

Query gene ID At5g05690
Gene name CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4253.9At5g05690830453CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.S.X.H.G.
0.4050.8At1g56220842075dormancy/auxin associated family proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PMOS.X.H.G.
0.3338.1At2g46220819229unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BPMOS.X.H.G.
0.2930.3At4g13830827017J20 (DNAJ-LIKE 20)DnaJ-like protein (J20); nuclear geneS.X.H.G.
0.1811.4At3g03150821070unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.999.7GSM25316548h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
20.399.6GSM25316324h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
18.599.5GSM25316648h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
16.499.5GSM128667Underwood_1-20_Mock-Inoculum-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
15.499.5GSM128659Underwood_1-12_Mock-Inoculum-24h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
15.399.4GSM25316424h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
15.399.4GSM282703arf2_brz_2GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlings
15.099.4GSM128650Underwood_1-3_Cor-10e6-24h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
14.599.4E-MEXP-1443-raw-cel-1581869515
14.099.4GSM2531628h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-448At4g36380829790ROT3 (ROTUNDIFOLIA 3)Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).C.G.S.X.
0.027e-446At3g50660824229DWF4 (DWARF 4)Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.C.G.S.X.
0.021e-242At1g78490844185CYP708A3member of CYP708AC.G.S.X.
0.022e-138At4g25830828688integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.022e-138At4g09930826582avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBPFVAC.G.S.X.
0.012e-138At3g18080821333BGLU44 (B-S GLUCOSIDASE 44)F:in 6 functions;P:carbohydrate metabolic process;C:cytosolic ribosome, cell wall, plant-type cell wall;BOPMFAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.182e-23111Glycine maxGmaAffx.74065.1.S1_atBQ295944--7e-27At5g05690CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)C.G.S.X.
0.029e-238Hordeum vulgareContig20267_atContig20267--4e+0At5g42070unknown proteinC.G.S.X.
0.102e-656Oryza sativaOs12g0139300AK060257.1-E-class P450, group I family protein1e-6At5g05690CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)C.G.S.X.
0.315e-1583Populus trichocarpaPtpAffx.79902.1.S1_atCV241105cytochrome P450 probable 6-deoxocathasterone to 6-deoxoteasterone or cathasterone to teasterone-2e-15At5g05690CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)C.G.S.X.
0.095e-859Triticum aestivumTa.4986.1.S1_atCK160160--5e-8At5g05690CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)C.G.S.X.
0.103e-652Vitis vinifera1609099_atCD005725hypothetical protein LOC100258692-9e-6At5g05690CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)C.G.S.X.
0.061e-344Zea maysZm.2464.1.S1_atAY108287.1hypothetical protein LOC100272666-3e-3At5g05690CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010224A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm.
XGO:0009911Any process that activates or increases the frequency, rate or extent of flower development.
XGO:0009826The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
XGO:0010268Any process involved in the maintenance of an internal equilibrium of brassinosteroids within an organism or cell.
XGO:0016132The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00050Link to KaPPA-View 4Brassinosteroid biosynthesis
00347Link to KaPPA-View 4Cytochrome P450



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
01062Link to KEGG PATHWAYBiosynthesis of terpenoids and steroids
01070Link to KEGG PATHWAYBiosynthesis of plant hormones
01100Link to KEGG PATHWAYMetabolic pathways
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