CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g05400

Gene name disease resistance protein (CC-NBS-LRR class), putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.91 95.6 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.89 94.6 At3g45410 823679 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. S.X. H.G.
0.77 88.0 At2g28990 817448 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.75 86.9 At1g07560 837270 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.67 81.6 At2g28960 817445 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.57 73.8 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
96.9 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
75.3 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
71.5 99.9 E-MEXP-828-raw-cel-1156922987
66.1 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
58.8 99.8 GSM157331 Coates_1-3_Col-3_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
52.8 99.8 E-MEXP-828-raw-cel-1156922485
51.6 99.8 E-MEXP-828-raw-cel-1156922794
50.8 99.8 GSM157335 Coates_1-7_Col-3_Rep2_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
49.6 99.8 E-MEXP-828-raw-cel-1156922829
48.8 99.8 E-MEXP-828-raw-cel-1156922944
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 6e-9 63 At4g10780 826674 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:unknown;PMBOFA C.G. S.X.
0.03 4e-7 57 At1g12220 837775 RPS5 (RESISTANT TO P. SYRINGAE 5) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB. C.G. S.X.
0.05 1e-6 56 At5g43730 834393 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
0.04 1e-6 56 At5g43740 834394 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
0.07 1e-6 56 At1g12210 837774 RFL1 (RPS5-like 1) RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5. C.G. S.X.
0.04 1e-6 56 At1g12280 837782 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
0.02 2e-5 52 At5g47250 834772 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:mitochondrion;PMBOFA C.G. S.X.
0.03 2e-5 52 At5g47260 834773 ATP binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, GTP binding, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:cellular_component unknown;PMBOFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Glycine max PsAffx.C168000009_at PsAffx.C168000009 - - 3e-1 At3g09910 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) C.G. S.X.
0.01 1e-2 42 Hordeum vulgare Contig19197_at Contig19197 - - 9e-1 At2g27080 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related C.G. S.X.
0.01 3e-3 46 Oryza sativa Os09g0272900 AK111519.1 - Skp1 (Fragment) 2e-5 At5g42190 ASK2 (ARABIDOPSIS SKP1-LIKE 2) C.G. S.X.
0.02 5e-4 48 Populus trichocarpa PtpAffx.215907.1.S1_at pmrna30371 hypothetical protein - 4e-1 At2g18350 AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24) C.G. S.X.
0.01 3e-1 38 Triticum aestivum TaAffx.58593.1.S1_x_at CA622323 - - 6e-61 At1g50010 TUA2 C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1622278_at CD714872 - - 8e-2 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.976.1.A1_at AI833931 - - 1e-2 At4g23880 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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