CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g05390

Gene name LAC12 (laccase 12)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.82 90.9 At5g05390 830421 LAC12 (laccase 12) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
0.95 97.0 At5g03170 831914 FLA11 F:unknown;P:unknown;C:anchored to membrane;PBOMAF S.X. H.G.
0.95 97.0 At4g27435 828852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.93 96.4 At5g15630 831417 IRX6 Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars. S.X. H.G.
0.93 96.4 At3g16920 820947 chitinase F:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOF S.X. H.G.
0.91 95.6 At2g41610 818759 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). S.X. H.G.
0.91 95.6 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. S.X. H.G.
0.91 95.6 At4g28500 828968 ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73) F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;PO S.X. H.G.
0.91 95.6 At1g27380 839627 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
425.1 100.0 E-MEXP-265-raw-cel-414617783
376.4 100.0 E-MEXP-265-raw-cel-414618693
332.0 100.0 E-MEXP-265-raw-cel-414617695
328.0 100.0 E-MEXP-265-raw-cel-414618585
268.9 100.0 E-MEXP-265-raw-cel-414617890
259.9 100.0 E-MEXP-265-raw-cel-414618796
132.6 99.9 E-MEXP-265-raw-cel-414618394
131.2 99.9 GSM133750 Turner_A-4-Turne-Mut-Base2_SLD GSE5729 Role of COV in vascular patterning
111.8 99.9 E-MEXP-265-raw-cel-414619106
107.9 99.9 E-MEXP-265-raw-cel-414618491
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.37 5e-24 113 At2g40370 818630 LAC5 (laccase 5) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
0.07 2e-8 61 At5g48100 834862 TT10 (TRANSPARENT TESTA 10) Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds. C.G. S.X.
0.08 2e-8 61 At2g38080 818386 IRX12 (IRREGULAR XYLEM 12) Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype. C.G. S.X.
0.08 2e-7 57 At5g01190 831697 LAC10 (laccase 10) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
0.11 2e-7 57 At5g03260 831887 LAC11 (laccase 11) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
0.14 4e-6 54 At5g07130 830604 LAC13 (laccase 13) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
0.03 2e-4 48 At5g58910 836008 LAC16 (laccase 16) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
0.04 9e-4 46 At5g09360 830795 LAC14 (laccase 14) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
0.03 9e-4 46 At5g60020 836124 LAC17 (laccase 17) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-18 95 Glycine max Gma.8441.1.S1_at AY113187.2 diphenol oxidase laccase - 1e-18 At5g05390 LAC12 (laccase 12) C.G. S.X.
0.02 4e-1 36 Hordeum vulgare HVSMEa0005O15r2_s_at HVSMEa0005O15r2 - - 3e-2 At3g09032 unknown protein C.G. S.X.
0.05 2e-6 56 Oryza sativa Os12g0108000 AK109523.1 - Laccase precursor (EC 1.10.3.2) 1e-6 At5g05390 LAC12 (laccase 12) C.G. S.X.
0.14 3e-13 77 Populus trichocarpa Ptp.1273.1.S1_at CV228408 laccase 90a - 2e-20 At2g40370 LAC5 (laccase 5) C.G. S.X.
0.04 6e-2 40 Triticum aestivum Ta.7346.2.S1_at BJ313080 - - 5e-2 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.09 1e-9 63 Vitis vinifera 1612157_at CF213489 hypothetical protein LOC100262045 - 1e-9 At5g05390 LAC12 (laccase 12) C.G. S.X.
0.01 1e+0 34 Zea mays Zm.4828.1.A1_at CA402577 - - 1e-3 At1g55475 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0046274 The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units.
L GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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