CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g04960

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g04960 830378 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.96 97.3 At5g67400 836876 peroxidase 73 (PER73) (P73) (PRXR11) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.96 97.3 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. S.X. H.G.
0.95 97.0 At4g33730 829515 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.94 96.7 At4g25820 828687 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. S.X. H.G.
0.94 96.7 At4g30320 829155 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.93 96.4 At3g62680 825442 PRP3 (PROLINE-RICH PROTEIN 3) Proline-rich protein S.X. H.G.
0.92 96.0 At5g05500 830433 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.91 95.6 At4g40090 830172 AGP3 (arabinogalactan-protein 3) F:unknown;P:multicellular organismal development;C:endomembrane system;P S.X. H.G.
0.91 95.6 At3g10710 820240 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
257.9 100.0 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
235.8 100.0 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
206.0 100.0 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
166.6 100.0 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
141.6 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
141.0 99.9 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
117.7 99.9 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
104.1 99.9 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
79.4 99.9 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
75.2 99.9 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 2e-57 224 At3g10710 820240 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 6e-5 50 At4g02330 828064 ATPMEPCRB F:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOM C.G. S.X.
0.03 6e-5 50 At2g47550 819368 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.03 9e-4 46 At1g02810 838078 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.01 3e-3 44 At3g49220 824083 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 3e-3 44 At1g53840 841821 ATPME1 encodes a pectin methylesterase C.G. S.X.
0.02 1e-2 42 At2g26440 817184 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 2e-1 38 At3g10800 820249 BZIP28 Encodes bZIP28, a putative membrane-tethered transcriptional factor. Up-regulated in response to heat; a bZIP28 null mutant has a heat-sensitive phenotype. bZIP28 has a similar domain structure to the mammalian ATF6 protein involved in the unfolded protein response (UPR), and shares a bZIP domain, transmembrane domain, and a canonical S1P cleavage site. The bZIP28 seems to be glycosylated in vivo. bZIP28 does not appear to be transcriptionally up-regulated by UPR-inducing tunicamycin (TM) treatment. But, the expression level of three UPR-related genes is reduced in TM-treated zip28 mutants relative to wild type seedlings. And several UPR genes are transcriptionally upregulated when an N-terminal portion of the bZIP28 protein is expressed using the 35S promoter. A myc:bZIP28 fusion protein appears to be cleaved, likely at a canonical S2 cleavage site, following a TM treatment or a DTT stress-inducing treatment, but not a salt treatment. A portion of the mGFP:bZIP28 protein present in root cells appears to translocate from the cytoplasm and ER to the nucleus following TM treatment. C.G. S.X.
0.02 2e-1 38 At3g59010 825070 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-6 54 Glycine max GmaAffx.92828.1.S1_at CF808553 - - 2e-5 At1g11580 PMEPCRA (METHYLESTERASE PCR A) C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig11541_at Contig11541 - - 3e-1 At2g05540 glycine-rich protein C.G. S.X.
Os01g0504000 0.01 7e+0 Oryza sativa Os01g0503900 9629.m02975 - - 3e-1 At1g62333 unknown protein C.G. S.X.
0.07 2e-8 61 Populus trichocarpa PtpAffx.209487.1.S1_at pmrna18811 hypothetical protein - 2e-8 At5g04960 pectinesterase family protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.16719.1.S1_at CA611430 - - 2e+0 At5g42850 - C.G. S.X.
0.02 6e-2 38 Vitis vinifera 1622847_a_at CF403381 hypothetical protein LOC100251447 - 5e-9 At4g18380 F-box family protein C.G. S.X.
0.02 4e-1 36 Zea mays ZmAffx.1193.1.A1_at BE025345 - - 3e+0 At3g13140 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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