CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g04950

Gene name NAS1 (NICOTIANAMINE SYNTHASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At5g04950 830377 NAS1 (NICOTIANAMINE SYNTHASE 1) Encodes a nicotianamide synthase. S.X. H.G.
0.33 38.1 At1g74760 - - - S.X. H.G.
0.33 38.1 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. S.X. H.G.
0.29 30.3 At3g46900 823843 COPT2 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast S.X. H.G.
0.18 11.4 At5g23020 832366 IMS2 (2-ISOPROPYLMALATE SYNTHASE 2) methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis. S.X. H.G.
0.02 0.4 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
115.4 99.9 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
83.8 99.9 GSM75520 slr-1 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
77.4 99.9 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
59.7 99.8 GSM75517 slr-1 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
49.3 99.8 E-MEXP-635-raw-cel-912819824
46.3 99.8 GSM75518 slr-1 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
43.0 99.8 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
42.2 99.8 E-MEXP-635-raw-cel-912819840
40.7 99.8 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
40.6 99.8 GSM184934 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 3e-178 624 At5g56080 835707 NAS2 (NICOTIANAMINE SYNTHASE 2) Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc. C.G. S.X.
0.13 5e-10 65 At1g56430 842096 NAS4 (NICOTIANAMINE SYNTHASE 4) F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO C.G. S.X.
0.21 5e-10 65 At1g09240 837444 NAS3 (NICOTIANAMINE SYNTHASE 3) Encodes a nicotianamine synthase. C.G. S.X.
0.02 5e-1 36 At1g16180 838187 TMS membrane family protein / tumour differentially expressed (TDE) family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO C.G. S.X.
0.01 2e+0 34 At5g53060 835386 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV C.G. S.X.
0.01 2e+0 34 At5g02330 831755 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO C.G. S.X.
0.01 2e+0 34 At5g02350 831920 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO C.G. S.X.
0.01 2e+0 34 At4g34350 829585 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling. C.G. S.X.
0.02 2e+0 34 At3g06868 6241205 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 4e-5 50 Glycine max GmaAffx.82770.1.S1_at BU550361 - - 3e-5 At5g04950 NAS1 (NICOTIANAMINE SYNTHASE 1) C.G. S.X.
0.03 4e+0 32 Hordeum vulgare Contig10740_at Contig10740 - - 4e-5 At1g56430 NAS4 (NICOTIANAMINE SYNTHASE 4) C.G. S.X.
0.03 9e-1 36 Oryza sativa OsAffx.30434.1.S1_at - - - 0 C.G. S.X.
0.07 3e+0 34 Populus trichocarpa PtpAffx.31911.1.S1_at CV230740 - - 1e-7 At1g09240 NAS3 (NICOTIANAMINE SYNTHASE 3) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.24170.1.S1_at CA724148 - - 1e+1 At5g43210 endo/excinuclease amino terminal domain-containing protein C.G. S.X.
0.05 1e-1 36 Vitis vinifera 1609159_at CF213225 hypothetical protein LOC100254544 - 4e-6 At1g56430 NAS4 (NICOTIANAMINE SYNTHASE 4) C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.849.1.A1_at AI770638 - - 6e-14 At2g20420 succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0030418 The chemical reactions and pathways resulting in the formation of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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