CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g04730

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g04730 830351 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.92 96.0 At1g33840 840280 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.87 93.5 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. S.X. H.G.
0.85 92.4 At5g37450 833722 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.80 89.8 At1g70880 843425 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.79 89.1 At5g52350 835311 ATEXO70A3 (exocyst subunit EXO70 family protein A3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.78 88.6 At1g49860 841409 ATGSTF14 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.67 81.6 At2g28270 817373 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.64 78.9 At1g11540 837697 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBAP S.X. H.G.
0.64 78.9 At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
341.1 100.0 E-MEXP-828-raw-cel-1156922485
231.9 100.0 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
223.3 100.0 E-MEXP-828-raw-cel-1156922296
212.5 100.0 E-MEXP-828-raw-cel-1156922509
201.1 100.0 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
199.0 100.0 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
175.7 100.0 E-MEXP-828-raw-cel-1156922368
139.2 99.9 E-MEXP-828-raw-cel-1156922750
137.5 99.9 E-MEXP-828-raw-cel-1156922455
131.2 99.9 E-MEXP-828-raw-cel-1156922731
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-1 38 At5g35810 833567 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e-1 38 At4g08920 826470 CRY1 (CRYPTOCHROME 1) Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings. C.G. S.X.
0.01 9e-1 36 At5g60980 836219 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;BMPOFVA C.G. S.X.
0.01 9e-1 36 At5g16730 831536 - F:unknown;P:unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.01 9e-1 36 At5g41315 834133 GL3 (GLABROUS 3) encodes a basic helix loop helix domain protein that interacts with GL1 in trichome development. C.G. S.X.
0.01 9e-1 36 At3g22690 821840 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:regulation of chlorophyll biosynthetic process, photosystem II assembly, photosystem I assembly, thylakoid membrane organization, RNA modification;C:chloroplast;POMFBA C.G. S.X.
0.01 9e-1 36 At3g18670 821398 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPBFAV C.G. S.X.
0.01 9e-1 36 At2g19220 816439 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-3 46 Glycine max Gma.14802.1.S1_at AW201116 - - 1e-5 At5g04700 - C.G. S.X.
0.02 2e+0 34 Hordeum vulgare EBro08_SQ002_H13_at EBro08_SQ002_H13 - - 6e-1 At3g43432 unknown protein C.G. S.X.
0.01 1e-1 40 Oryza sativa OsAffx.15487.1.S1_at - - - 0 C.G. S.X.
0.02 8e-2 40 Populus trichocarpa PtpAffx.205440.1.S1_x_at pmrna10753 hypothetical protein - 2e-22 At5g21990 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.02 9e-1 36 Triticum aestivum TaAffx.83156.1.S1_at CA660974 - - 9e-1 At2g37630 AS1 (ASYMMETRIC LEAVES 1) C.G. S.X.
0.02 7e-2 38 Vitis vinifera 1619862_at CB979196 hypothetical protein LOC100251016 - 3e-1 At4g32470 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative C.G. S.X.
0.01 2e+0 34 Zea mays Zm.17646.1.S1_at CK368863 BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein - 5e-3 At2g37585 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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