CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g04680

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.94 96.7 At5g04680 830346 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF S.X. H.G.
0.99 98.1 At1g61760 842473 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.99 98.1 At5g38070 833787 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV S.X. H.G.
0.98 97.8 At1g05760 837084 RTM1 (restricted tev movement 1) Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance S.X. H.G.
0.98 97.8 At1g05770 837085 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.98 97.8 At1g73370 843672 SUS6 (SUCROSE SYNTHASE 6) Encodes a protein with sucrose synthase activity (SUS6). S.X. H.G.
0.98 97.8 At2g14620 815950 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO S.X. H.G.
0.98 97.8 At2g27140 817256 heat shock family protein F:molecular_function unknown;P:response to heat;C:membrane;PBOM S.X. H.G.
0.98 97.8 At3g03200 821226 anac045 (Arabidopsis NAC domain containing protein 45) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMB S.X. H.G.
0.98 97.8 At3g13590 820561 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
776.8 100.0 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
563.1 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
334.4 100.0 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
226.4 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
226.0 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
220.5 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
198.0 100.0 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
179.6 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
179.6 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
165.7 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.88 0 1067 At5g04700 830348 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF C.G. S.X.
0.72 2e-147 523 At5g04690 830347 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFAV C.G. S.X.
0.02 7e-2 40 At3g18670 821398 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPBFAV C.G. S.X.
0.01 7e-2 40 At1g06330 837144 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;PBMF C.G. S.X.
0.01 3e-1 38 At2g32160 817775 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP C.G. S.X.
0.01 1e+0 36 At4g32390 829374 phosphate translocator-related F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-2 42 Glycine max Gma.14802.1.S1_at AW201116 - - 1e-5 At5g04700 - C.G. S.X.
0.01 5e-1 36 Hordeum vulgare HR01I06u_at HR01I06u - - 3e+0 At4g23080 unknown protein C.G. S.X.
0.02 2e+0 36 Oryza sativa Os09g0116250 9637.m00123 - - 4e+0 At5g35069 unknown protein C.G. S.X.
0.02 2e+0 36 Populus trichocarpa PtpAffx.39227.1.S1_s_at CK101765 hypothetical protein - 2e-1 At4g14385 - C.G. S.X.
0.01 1e+0 36 Triticum aestivum Ta.12758.2.S1_x_at CA638333 - - 9e-1 At1g47990 ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4) C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1615409_at CB970366 - - 1e+0 At1g35242 unknown protein C.G. S.X.
0.01 5e-1 36 Zea mays Zm.2442.1.A1_at BG841393 hypothetical protein LOC100193531 - 2e-1 At2g45190 AFO (ABNORMAL FLORAL ORGANS) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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