Gene omics information

Query gene ID At5g04530
Gene name KCS19 (3-KETOACYL-COA SYNTHASE 19)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3338.1At5g04530830332KCS19 (3-KETOACYL-COA SYNTHASE 19)Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).S.X.H.G.
0.6781.6At2g21140816649ATPRP2 (PROLINE-RICH PROTEIN 2)Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.S.X.H.G.
0.5065.3At2g43050818907ATPMEPCRDF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMS.X.H.G.
0.5065.3At3g48970824058copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBOS.X.H.G.
0.4050.8At4g25830828688integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
75.299.9GSM10449WT Cotyledon Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
62.299.8GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
58.499.8GSM131205AtGen_D-39_3-UL_REP3_ATH1GSE5617AtGenExpress: Light treatments
53.999.8GSM131172AtGen_D-4_1-RL_REP1_ATH1GSE5617AtGenExpress: Light treatments
53.299.8GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
52.299.8GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
48.099.8GSM131187AtGen_D-20_2-RL_REP2_ATH1GSE5617AtGenExpress: Light treatments
47.199.8GSM131204AtGen_D-38_3-AL_REP3_ATH1GSE5617AtGenExpress: Light treatments
46.599.8E-MEXP-715-raw-cel-1121836030
45.099.8GSM131202AtGen_D-36_3-RL_REP3_ATH1GSE5617AtGenExpress: Light treatments
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e-448At1g01120839395KCS1 (3-KETOACYL-COA SYNTHASE 1)Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.C.G.S.X.
0.021e-242At4g34510829602KCS17 (3-KETOACYL-COA SYNTHASE 17)Encodes KCS17, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).C.G.S.X.
0.022e-138At1g63180842622UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development.C.G.S.X.
0.027e-136At1g610936241107unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.023e+034At5g43760834398KCS20 (3-KETOACYL-COA SYNTHASE 20)Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).C.G.S.X.
0.023e+034At4g25400828643basix helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PC.G.S.X.
0.013e+034At3g26380822242glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family proteinF:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:N-terminal protein myristoylation, carbohydrate metabolic process, metabolic process, lactose catabolic process;C:cell wall;MBFPOC.G.S.X.
0.013e+034At2g46790819292APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9)Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-242Glycine maxGma.15547.2.A1_atCD415247--8e-13At4g34510KCS17 (3-KETOACYL-COA SYNTHASE 17)C.G.S.X.
0.025e+032Hordeum vulgareContig17109_atContig17109--5e+0At4g27410RD26 (RESPONSIVE TO DESICCATION 26)C.G.S.X.
0.021e+036Oryza sativaOs01g0174900AK104777.1-Glutaredoxin-related protein family protein3e-2At3g15660GRX4 (GLUTAREDOXIN 4)C.G.S.X.
0.122e-138Populus trichocarpaPtpAffx.58533.1.S1_atCK090422beta-ketoacyl-coa synthase family protein-1e-1At5g04530KCS19 (3-KETOACYL-COA SYNTHASE 19)C.G.S.X.
0.027e-136Triticum aestivumTaAffx.93986.1.S1_atBG263529--4e+0At5g01530chlorophyll A-B binding protein CP29 (LHCB4)C.G.S.X.
0.079e-754Vitis vinifera1613811_a_atCB920849VVTL1-5e-13At1g07720KCS3 (3-KETOACYL-COA SYNTHASE 3)C.G.S.X.
0.022e+130Zea maysZmAffx.452.1.A1_atAI677152--3e-6At3g03380DegP7 (DegP protease 7)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0009416A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00040Link to KaPPA-View 4Fatty acid elongation and wax biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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