CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g04530

Gene name KCS19 (3-KETOACYL-COA SYNTHASE 19)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At5g04530 830332 KCS19 (3-KETOACYL-COA SYNTHASE 19) Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
0.67 81.6 At2g21140 816649 ATPRP2 (PROLINE-RICH PROTEIN 2) Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques. S.X. H.G.
0.50 65.3 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM S.X. H.G.
0.50 65.3 At3g48970 824058 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO S.X. H.G.
0.40 50.8 At4g25830 828688 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
75.2 99.9 GSM10449 WT Cotyledon Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
62.2 99.8 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
58.4 99.8 GSM131205 AtGen_D-39_3-UL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
53.9 99.8 GSM131172 AtGen_D-4_1-RL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
53.2 99.8 GSM10448 WT Cotyledon Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
52.2 99.8 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
48.0 99.8 GSM131187 AtGen_D-20_2-RL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
47.1 99.8 GSM131204 AtGen_D-38_3-AL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
46.5 99.8 E-MEXP-715-raw-cel-1121836030
45.0 99.8 GSM131202 AtGen_D-36_3-RL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-4 48 At1g01120 839395 KCS1 (3-KETOACYL-COA SYNTHASE 1) Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. C.G. S.X.
0.02 1e-2 42 At4g34510 829602 KCS17 (3-KETOACYL-COA SYNTHASE 17) Encodes KCS17, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.02 2e-1 38 At1g63180 842622 UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3) Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development. C.G. S.X.
0.02 7e-1 36 At1g61093 6241107 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 3e+0 34 At5g43760 834398 KCS20 (3-KETOACYL-COA SYNTHASE 20) Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.02 3e+0 34 At4g25400 828643 basix helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P C.G. S.X.
0.01 3e+0 34 At3g26380 822242 glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:N-terminal protein myristoylation, carbohydrate metabolic process, metabolic process, lactose catabolic process;C:cell wall;MBFPO C.G. S.X.
0.01 3e+0 34 At2g46790 819292 APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9) Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-2 42 Glycine max Gma.15547.2.A1_at CD415247 - - 8e-13 At4g34510 KCS17 (3-KETOACYL-COA SYNTHASE 17) C.G. S.X.
0.02 5e+0 32 Hordeum vulgare Contig17109_at Contig17109 - - 5e+0 At4g27410 RD26 (RESPONSIVE TO DESICCATION 26) C.G. S.X.
0.02 1e+0 36 Oryza sativa Os01g0174900 AK104777.1 - Glutaredoxin-related protein family protein 3e-2 At3g15660 GRX4 (GLUTAREDOXIN 4) C.G. S.X.
0.12 2e-1 38 Populus trichocarpa PtpAffx.58533.1.S1_at CK090422 beta-ketoacyl-coa synthase family protein - 1e-1 At5g04530 KCS19 (3-KETOACYL-COA SYNTHASE 19) C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.93986.1.S1_at BG263529 - - 4e+0 At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) C.G. S.X.
0.07 9e-7 54 Vitis vinifera 1613811_a_at CB920849 VVTL1 - 5e-13 At1g07720 KCS3 (3-KETOACYL-COA SYNTHASE 3) C.G. S.X.
0.02 2e+1 30 Zea mays ZmAffx.452.1.A1_at AI677152 - - 3e-6 At3g03380 DegP7 (DegP protease 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
X GO:0009416 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00040 Fatty acid elongation and wax biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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