CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g04460

Gene name protein binding / zinc ion binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.58 73.8 At5g04460 830324 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV S.X. H.G.
0.77 88.0 At5g15470 831400 GAUT14 (Galacturonosyltransferase 14) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.65 79.6 At1g54920 841930 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;MOPFB S.X. H.G.
0.64 78.9 At4g20890 827837 TUB9 tubulin 9 S.X. H.G.
0.63 78.1 At3g01040 821312 GAUT13 (Galacturonosyltransferase 13) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.61 76.7 At3g47080 823861 binding F:binding;P:unknown;C:unknown;PBOAM S.X. H.G.
0.61 76.7 At1g22200 838825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFP S.X. H.G.
0.61 76.7 At5g58950 836012 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVA S.X. H.G.
0.59 74.7 At3g51770 824340 ETO1 (ETHYLENE OVERPRODUCER 1) Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS S.X. H.G.
0.49 63.5 At1g06700 837180 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
125.0 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
109.9 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
66.4 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
61.5 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.8 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.4 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.7 99.8 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
52.5 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.4 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.9 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-1 38 At4g20940 827842 leucine-rich repeat family protein F:protein binding;P:signal transduction, N-terminal protein myristoylation;C:plasma membrane;PMOBFAV C.G. S.X.
0.01 3e-1 38 At2g40030 818591 NRPD1B Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing. C.G. S.X.
0.00 1e+0 36 At5g40480 834046 EMB3012 (embryo defective 3012) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBP C.G. S.X.
0.01 1e+0 36 At5g40380 834036 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 1e+0 36 At2g47640 819377 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPA C.G. S.X.
0.01 1e+0 36 At1g68330 843162 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.01 5e+0 34 At5g05700 830454 ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1) Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence. C.G. S.X.
0.01 5e+0 34 At5g23740 832439 RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) Encodes a putative ribosomal protein S11 (RPS11-beta). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-18 95 Glycine max Gma.5426.1.S1_at BI497927 - - 3e-19 At5g04460 protein binding / zinc ion binding C.G. S.X.
0.04 1e-11 71 Hordeum vulgare Contig19803_at Contig19803 - - 6e-12 At5g04460 protein binding / zinc ion binding C.G. S.X.
0.05 7e-10 67 Oryza sativa Os09g0570500 AK069259.1 - The start codon is not identified. 2e-10 At5g04460 protein binding / zinc ion binding C.G. S.X.
0.23 7e-34 147 Populus trichocarpa PtpAffx.133890.1.A1_at CV257795 hypothetical protein - 2e-34 At5g04460 protein binding / zinc ion binding C.G. S.X.
0.03 9e-5 50 Triticum aestivum TaAffx.70088.1.S1_at BQ605972 - - 5e-5 At5g04460 protein binding / zinc ion binding C.G. S.X.
0.23 2e-30 133 Vitis vinifera 1619736_at CF210461 hypothetical protein LOC100241098 - 3e-30 At5g04460 protein binding / zinc ion binding C.G. S.X.
0.01 2e+0 34 Zea mays Zm.18008.1.A1_at BG841554 hypothetical protein LOC100192752 - 2e-2 At1g52560 26.5 kDa class I small heat shock protein-like (HSP26.5-P) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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