Gene omics information

Query gene ID At5g04460
Gene name protein binding / zinc ion binding
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5873.8At5g04460830324protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVS.X.H.G.
0.7788.0At5g15470831400GAUT14 (Galacturonosyltransferase 14)Encodes a protein with putative galacturonosyltransferase activity.S.X.H.G.
0.6579.6At1g54920841930unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;MOPFBS.X.H.G.
0.6478.9At4g20890827837TUB9tubulin 9S.X.H.G.
0.6378.1At3g01040821312GAUT13 (Galacturonosyltransferase 13)Encodes a protein with putative galacturonosyltransferase activity.S.X.H.G.
0.6176.7At1g22200838825unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFPS.X.H.G.
0.6176.7At5g58950836012protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVAS.X.H.G.
0.5974.7At3g51770824340ETO1 (ETHYLENE OVERPRODUCER 1)Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACSS.X.H.G.
0.4963.5At1g06700837180serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
125.099.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
109.999.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
66.499.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
61.599.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
53.799.8GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
50.999.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-138At4g20940827842leucine-rich repeat family proteinF:protein binding;P:signal transduction, N-terminal protein myristoylation;C:plasma membrane;PMOBFAVC.G.S.X.
0.013e-138At2g40030818591NRPD1BEncodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing.C.G.S.X.
0.001e+036At5g40480834046EMB3012 (embryo defective 3012)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBPC.G.S.X.
0.011e+036At5g40380834036protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.011e+036At2g47640819377small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putativeF:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPAC.G.S.X.
0.011e+036At1g68330843162unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFC.G.S.X.
0.015e+034At5g05700830454ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.C.G.S.X.
0.015e+034At5g23740832439RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)Encodes a putative ribosomal protein S11 (RPS11-beta).C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.082e-1895Glycine maxGma.5426.1.S1_atBI497927--3e-19At5g04460protein binding / zinc ion bindingC.G.S.X.
0.041e-1171Hordeum vulgareContig19803_atContig19803--6e-12At5g04460protein binding / zinc ion bindingC.G.S.X.
0.057e-1067Oryza sativaOs09g0570500AK069259.1-The start codon is not identified.2e-10At5g04460protein binding / zinc ion bindingC.G.S.X.
0.237e-34147Populus trichocarpaPtpAffx.133890.1.A1_atCV257795hypothetical protein-2e-34At5g04460protein binding / zinc ion bindingC.G.S.X.
0.039e-550Triticum aestivumTaAffx.70088.1.S1_atBQ605972--5e-5At5g04460protein binding / zinc ion bindingC.G.S.X.
0.232e-30133Vitis vinifera1619736_atCF210461hypothetical protein LOC100241098-3e-30At5g04460protein binding / zinc ion bindingC.G.S.X.
0.012e+034Zea maysZm.18008.1.A1_atBG841554hypothetical protein LOC100192752-2e-2At1g5256026.5 kDa class I small heat shock protein-like (HSP26.5-P)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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