Gene omics information

Query gene ID At5g04380
Gene name S-adenosyl-L-methionine:carboxyl methyltransferase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g04380830317S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMFS.X.H.G.
0.4659.8At4g22100828299BGLU3 (BETA GLUCOSIDASE 2)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAS.X.H.G.
0.4558.3At5g64190836540unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4355.3At2g33520817917-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFS.X.H.G.
0.4355.3At2g34315817993disease resistance protein-relatedF:GTP binding;P:biological_process unknown;C:cellular_component unknown;PMFS.X.H.G.
0.4050.8At3g60730825244pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMS.X.H.G.
0.3439.8At1g29680839845unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFS.X.H.G.
0.3133.8At5g45690834608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFS.X.H.G.
0.2930.3At5g07190830610ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.S.X.H.G.
0.2930.3At1g05510837053-Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
307.6100.0GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
183.2100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
157.199.9GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
113.399.9E-TABM-18-raw-cel-489542751
99.999.9E-TABM-18-raw-cel-489542783
99.199.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
95.399.9E-MEXP-637-raw-cel-913039056
92.299.9E-TABM-18-raw-cel-489543037
88.699.9GSM10451WT Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
85.699.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.649e-108391At5g04370830316NAMT1A member of the Arabidopsis SABATH methyltransferase gene family. Encodes NAMT1, a methyltransferase that methylates nicotinic acid.C.G.S.X.
0.693e-92339At5g66430836775S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:S-adenosyl-Lmethionine:benzoic acid acid carboxyl methyl transferase activity;P:biological_process unknown;C:cellular_component unknown;POBMFC.G.S.X.
0.433e-52206At3g11480820321BSMT1The gene encodes a SABATH methyltransferase that methylates both salicylic acid and benzoic acid. It is highly expressed in flowers, induced by biotic and abiotic stress and thought to be involved in direct defense mechanism.C.G.S.X.
0.042e-448At5g38020833781S-adenosyl-L-methionine:carboxyl methyltransferase family proteinencodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)C.G.S.X.
0.032e-344At2g14060815891S-adenosyl-L-methionine:carboxyl methyltransferase family proteinencodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)C.G.S.X.
0.036e-136At4g36470829799S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:S-adenosylmethionine-dependent methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMFC.G.S.X.
0.016e-136At4g37270829881HMA1Encodes a P1B-type ATPases that is localized to the chloroplast envelope and is involved in the transport of Cu into chloroplasts. It is essential for growth under high light conditions.C.G.S.X.
0.046e-136At3g21950821753methyltransferaseF:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.038e-136Glycine maxGmaAffx.33178.1.S1_atBQ628360--6e+0At5g63240glycosyl hydrolase family protein 17C.G.S.X.
0.031e+034Hordeum vulgareHVSMEb0006N17f_atHVSMEb0006N17f--5e-2At5g52160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.021e+036Oryza sativaOsAffx.30986.1.S1_at---0C.G.S.X.
0.023e+034Populus trichocarpaPtpAffx.7711.1.A1_s_atCN520343hypothetical protein-5e-10At2g20840secretory carrier membrane protein (SCAMP) family proteinC.G.S.X.
0.022e+034Triticum aestivumTaAffx.50783.1.S1_atCA735438--2e+0At3g11620unknown proteinC.G.S.X.
0.037e-134Vitis vinifera1609776_atCB979308hypothetical protein LOC100252635-1e-19At1g73875endonuclease/exonuclease/phosphatase family proteinC.G.S.X.
0.022e-136Zea maysZm.3064.1.A1_atAW147032--5e-7At1g70320UPL2 (UBIQUITIN-PROTEIN LIGASE 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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