Gene omics information

Query gene ID At5g04200
Gene name AtMC9 (metacaspase 9)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g04200830299AtMC9 (metacaspase 9)F:cysteine-type peptidase activity;P:proteolysis;C:apoplast;FPBOAS.X.H.G.
0.5773.8At4g18425827573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3338.1At1g26820839225RNS3 (RIBONUCLEASE 3)Encodes ribonuclease RNS3.S.X.H.G.
0.3338.1At2g14095815895unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFBS.X.H.G.
0.3338.1At3g45010823636scpl48 (serine carboxypeptidase-like 48)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBS.X.H.G.
0.114.1At1g70670843404caleosin-related family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
382.4100.0GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
336.7100.0GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
319.0100.0GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
294.9100.0GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
100.999.9GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
90.299.9GSM184907Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
82.099.9GSM184920Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
77.799.9GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
73.099.9GSM184908Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
62.599.8GSM184479Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.038e-342At1g16420838212MC8 (METACASPASE 8)Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2), UV light, and methyl viologen (MV). Transcript levels rise in response to UV-C, H2O2, and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue, and it has a pH optimum of 8.0.C.G.S.X.
0.041e-138At1g79320844270AtMC6 (metacaspase 6)F:cysteine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;BOFPAC.G.S.X.
0.061e-138At1g79330844271ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5)Metacaspase AtMCPb2/AMC6. Caspase family protein. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam domain, PF00656: ICE-like protease (caspase) p20 domain.C.G.S.X.
0.025e-136At3g17500821015F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.015e-136At1g07380837250ceramidase family proteinF:ceramidase activity;P:biological_process unknown;C:plasma membrane;BMFOPC.G.S.X.
0.012e+034At4g00750825923dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;PBOC.G.S.X.
0.032e+034At3g42570823269peroxidase-relatedF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cellular_component unknown;POC.G.S.X.
0.012e+034At2g41210818720PIP5K5 (PHOSPHATIDYLINOSITOL- 4-PHOSPHATE 5-KINASE 5)Encodes a protein with phosphatidylinositol-4-phosphate 5-kinase activity that plays a role in pollen tip growth. The enzyme localizes to the apical plasma membrane and adjacent cytosolic region of pollen tubes. Overexpression of this gene leads to increased deposition of pectin in the cell wall at the tip of the pollen tube and causes altered pollen tube morphology.C.G.S.X.
0.032e+034At1g62350842533-F:molecular_function unknown;P:biological_process unknown;C:unknown;PMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e+034Glycine maxGma.7051.1.A1_atBU544101--4e+0At5g53045-C.G.S.X.
0.042e-446Hordeum vulgareContig7837_atContig7837--7e-4At5g04200AtMC9 (metacaspase 9)C.G.S.X.
0.041e-346Oryza sativaOs01g0799900AK072822.1-Latex-abundant protein9e-4At5g04200AtMC9 (metacaspase 9)C.G.S.X.
0.133e-344Populus trichocarpaPtpAffx.206022.1.S1_atpmrna11932hypothetical protein-2e-3At5g04200AtMC9 (metacaspase 9)C.G.S.X.
0.022e+034Triticum aestivumTaAffx.81718.1.S1_atCA682690--4e+0At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)C.G.S.X.
0.104e-857Vitis vinifera1608947_atCF609927hypothetical protein LOC100244812-7e-8At5g04200AtMC9 (metacaspase 9)C.G.S.X.
0.022e-136Zea maysZm.16117.1.S1_atCF075483--3e-1At5g04200AtMC9 (metacaspase 9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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