Gene omics information

Query gene ID At5g04040
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g04040830283SDP1 (SUGAR-DEPENDENT1)Encodes a triacylglycerol lipase that is involved in storage lipid breakdown during seed germination. The mutant plant exhibits a much slower rate of postgerminative growth than the wild type.S.X.H.G.
0.4050.8At3g51840824347ACX4 (ACYL-COA OXIDASE 4)Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain acyl-CoA and are resistant to 2,4-dichlorophenoxybutyric acid, which is converted to the herbicide and auxin analogue 2,4-dichlorophenoxyacetic acid by beta-oxidation. Despite the almost complete loss of short-chain activity, lipid catabolism and seedling growth and establishment was unaltered in the acx4 mutant. However, double mutants in acx3acx4 (acx3 encodes medium chain acyl CoA oxidase) were not viable and arrested during embryogenesis.S.X.H.G.
0.1811.4At5g63620836482oxidoreductase, zinc-binding dehydrogenase family proteinF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAVS.X.H.G.
0.071.9At3g15070820736zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVBS.X.H.G.
0.071.9At3g07560819945PEX13 (PEROXIN 13)Encodes peroxin 13 (PEX13) involved in protein transport into peroxisomes.S.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
112.299.9GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.499.8GSM133400Knight_2-3_sfr6-lt_Rep1_ATH1GSE5710Dark-induced gene expression in sfr6
38.299.8GSM205185protoplast_KIN10_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
27.399.7GSM205159protoplast_KIN10_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
22.299.6GSM133402Knight_2-4_sfr6-dk_Rep1_ATH1GSE5710Dark-induced gene expression in sfr6
20.499.6GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.333e-38161At3g57140824881patatin-relatedF:GTP binding;P:metabolic process, lipid metabolic process;C:cellular_component unknown;BFOPMC.G.S.X.
0.013e-138At5g54380835526THE1 (THESEUS1)F:protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.013e-138At5g54020835485zinc ion bindingF:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOFC.G.S.X.
0.011e+036At5g21160832242La domain-containing protein / proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MFPBOVAC.G.S.X.
0.011e+036At5g47790834830forkhead-associated domain-containing protein / FHA domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFAC.G.S.X.
0.011e+036At4g07960826301ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)encodes a gene similar to cellulose synthaseC.G.S.X.
0.011e+036At4g03140828065binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.011e+036At3g46960823849ATP binding / ATP-dependent helicase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid bindingF:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:biological_process unknown;C:vacuole;OBMFAPVC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.155e-1377Glycine maxGmaAffx.86013.1.S1_atBF595565--6e-14At5g04040SDP1 (SUGAR-DEPENDENT1)C.G.S.X.
0.016e-136Hordeum vulgareContig14951_atContig14951--6e-1At3g24535unknown proteinC.G.S.X.
0.141e-1793Oryza sativaOs01g0762000AK120818.1-Patatin family protein1e-17At5g04040SDP1 (SUGAR-DEPENDENT1)C.G.S.X.
0.492e-80301Populus trichocarpaPtpAffx.213271.1.S1_atpmrna25958hypothetical protein-2e-76At5g04040SDP1 (SUGAR-DEPENDENT1)C.G.S.X.
0.021e+036Triticum aestivumTaAffx.51710.1.S1_atCA720223--6e-4At5g15490UDP-glucose 6-dehydrogenase, putativeC.G.S.X.
0.014e-136Vitis vinifera1614795_atCD799145hypothetical protein LOC100245048-7e-74At3g46440UXS5C.G.S.X.
0.082e-654Zea maysZm.4256.1.S1_atCA403577--3e-6At5g04040SDP1 (SUGAR-DEPENDENT1)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0019433The chemical reactions and pathways resulting in the breakdown of a triglyceride, any triester of glycerol.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage