Gene omics information

Query gene ID At5g03860
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At5g03860831690MLS (MALATE SYNTHASE)Encodes a protein with malate synthase activity.S.X.H.G.
0.6781.6At2g47780819390rubber elongation factor (REF) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6781.6At3g21720821726ICL (ISOCITRATE LYASE)Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).S.X.H.G.
0.6781.6At4g36880829841CP1 (CYSTEINE PROTEINASE1)F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAFS.X.H.G.
0.5065.3At1g60090842304BGLU4 (BETA GLUCOSIDASE 4)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAS.X.H.G.
0.5065.3At4g39500830104CYP96A11member of CYP96AS.X.H.G.
0.5065.3At5g05290830411ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
93.999.9GSM133312RIKEN-LI1BGSE5701AtGenExpress: Basic hormone treatment of seeds
78.999.9GSM133320RIKEN-LI5BGSE5701AtGenExpress: Basic hormone treatment of seeds
75.399.9GSM133315RIKEN-LI3AGSE5701AtGenExpress: Basic hormone treatment of seeds
72.299.9GSM133314RIKEN-LI2BGSE5701AtGenExpress: Basic hormone treatment of seeds
70.799.9GSM133316RIKEN-LI3BGSE5701AtGenExpress: Basic hormone treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.018e-136At3g25520822138ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.C.G.S.X.
0.018e-136At2g31100817666triacylglycerol lipaseF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFBOMC.G.S.X.
0.018e-136At2g41060818705RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBVC.G.S.X.
0.013e+034At5g14240831274-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBC.G.S.X.
0.013e+034At5g59390836058XH/XS domain-containing proteinF:unknown;P:biological_process unknown;C:unknown;MOBFPAVC.G.S.X.
0.013e+034At5g45850834625unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMC.G.S.X.
0.013e+034At5g51270835201protein kinase family proteinF:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVAC.G.S.X.
0.013e+034At4g29920829115heat shock protein-relatedF:protein binding;P:protein metabolic process;C:chloroplast;BOPMFAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.442e-64248Glycine maxGma.8130.1.S1_atAI966352malate synthase-1e-64At5g03860MLS (MALATE SYNTHASE)C.G.S.X.
0.113e-859Hordeum vulgareContig4785_atContig4785--4e-8At5g03860MLS (MALATE SYNTHASE)C.G.S.X.
0.152e-965Oryza sativaOs.26687.1.S1_at---0C.G.S.X.
0.488e-79295Populus trichocarpaPtp.7022.1.S1_atCF235511hypothetical protein-5e-79At5g03860MLS (MALATE SYNTHASE)C.G.S.X.
0.021e+132Triticum aestivumTaAffx.82859.1.S1_atCA698593--2e+1At5g53650unknown proteinC.G.S.X.
0.023e-136Vitis vinifera1607767_atCF216032hypothetical protein LOC100252749-4e-1At3g57640protein kinase family proteinC.G.S.X.
0.171e-1687Zea maysZm.299.1.S1_a_atL35914.1malate synthase1-3e-16At5g03860MLS (MALATE SYNTHASE)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006097A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00152Link to KaPPA-View 4Glyoxylate cycle

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00620Link to KEGG PATHWAYPyruvate metabolism
00630Link to KEGG PATHWAYGlyoxylate and dicarboxylate metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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