CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g03860

Gene name MLS (MALATE SYNTHASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. S.X. H.G.
0.67 81.6 At2g47780 819390 rubber elongation factor (REF) protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). S.X. H.G.
0.67 81.6 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF S.X. H.G.
0.50 65.3 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA S.X. H.G.
0.50 65.3 At4g39500 830104 CYP96A11 member of CYP96A S.X. H.G.
0.50 65.3 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
114.0 99.9 E-MEXP-1607-raw-cel-1620685786
100.7 99.9 E-MEXP-1607-raw-cel-1620685794
97.6 99.9 E-MEXP-1607-raw-cel-1620685770
93.9 99.9 GSM133312 RIKEN-LI1B GSE5701 AtGenExpress: Basic hormone treatment of seeds
92.2 99.9 E-MEXP-1607-raw-cel-1620685802
83.2 99.9 E-MEXP-1607-raw-cel-1620685810
78.9 99.9 GSM133320 RIKEN-LI5B GSE5701 AtGenExpress: Basic hormone treatment of seeds
75.3 99.9 GSM133315 RIKEN-LI3A GSE5701 AtGenExpress: Basic hormone treatment of seeds
72.2 99.9 GSM133314 RIKEN-LI2B GSE5701 AtGenExpress: Basic hormone treatment of seeds
70.7 99.9 GSM133316 RIKEN-LI3B GSE5701 AtGenExpress: Basic hormone treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 8e-1 36 At3g25520 822138 ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5) Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2. C.G. S.X.
0.01 8e-1 36 At2g31100 817666 triacylglycerol lipase F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFBOM C.G. S.X.
0.01 8e-1 36 At2g41060 818705 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBV C.G. S.X.
0.01 3e+0 34 At5g14240 831274 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB C.G. S.X.
0.01 3e+0 34 At5g59390 836058 XH/XS domain-containing protein F:unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 3e+0 34 At5g45850 834625 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
0.01 3e+0 34 At5g51270 835201 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA C.G. S.X.
0.01 3e+0 34 At4g29920 829115 heat shock protein-related F:protein binding;P:protein metabolic process;C:chloroplast;BOPMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 2e-64 248 Glycine max Gma.8130.1.S1_at AI966352 malate synthase - 1e-64 At5g03860 MLS (MALATE SYNTHASE) C.G. S.X.
0.11 3e-8 59 Hordeum vulgare Contig4785_at Contig4785 - - 4e-8 At5g03860 MLS (MALATE SYNTHASE) C.G. S.X.
0.15 2e-9 65 Oryza sativa Os.26687.1.S1_at - - - 0 C.G. S.X.
0.48 8e-79 295 Populus trichocarpa Ptp.7022.1.S1_at CF235511 hypothetical protein - 5e-79 At5g03860 MLS (MALATE SYNTHASE) C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.82859.1.S1_at CA698593 - - 2e+1 At5g53650 unknown protein C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1607767_at CF216032 hypothetical protein LOC100252749 - 4e-1 At3g57640 protein kinase family protein C.G. S.X.
0.17 1e-16 87 Zea mays Zm.299.1.S1_a_at L35914.1 malate synthase1 - 3e-16 At5g03860 MLS (MALATE SYNTHASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006097 A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00152 Glyoxylate cycle

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00620 Pyruvate metabolism
00630 Glyoxylate and dicarboxylate metabolism
01100 Metabolic pathways
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