Gene omics information

Query gene ID At5g03680
Gene name PTL (PETAL LOSS)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At5g03680831757PTL (PETAL LOSS)Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs.S.X.H.G.
0.4050.8At3g04510819607LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMS.X.H.G.
0.4050.8At5g28490832941LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.S.X.H.G.
0.040.9At4g29080829029PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)phytochrome-associated protein 2 (PAP2)S.X.H.G.
0.040.9At1g70510843388KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
207.5100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
196.6100.0GSM142662MB002_ATH1_A2-Eland-ch2GSE6153Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
192.7100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
168.9100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
159.699.9GSM142661MB002_ATH1_A1-Eland-ch1GSE6153Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
144.599.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
134.899.9GSM142639MC002_ATH1_A6.2-dubos-5kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.313e-50200At3g10000820161EDA31 (embryo sac development arrest 31)F:transcription factor activity;P:polar nucleus fusion, regulation of transcription;C:unknown;PMOFC.G.S.X.
0.021e-242At5g44140834437ATPHB7 (PROHIBITIN 7)F:unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I, membrane;BOMFPAVC.G.S.X.
0.021e-242At2g24260816961basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOC.G.S.X.
0.026e-240At5g25190832590ethylene-responsive element-binding protein, putativeencodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.C.G.S.X.
0.026e-240At3g61550825328zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.026e-240At2g37000818274TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:chloroplast;PC.G.S.X.
0.012e-138At5g21280832258hydroxyproline-rich glycoprotein family proteinF:unknown;P:unknown;C:unknown;MPOFBVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.028e-240Glycine maxGma.15891.2.S1_atBI316425--1e-3At1g22800methyltransferaseC.G.S.X.
0.022e+034Hordeum vulgareHW06F15u_atHW06F15u--4e+0At4g02235AGL51C.G.S.X.
0.022e+036Oryza sativaOs11g06126009639.m03633--6e-1At1g13380unknown proteinC.G.S.X.
0.076e-1583Populus trichocarpaPtpAffx.209557.1.S1_atpmrna18924hypothetical protein-3e-15At5g03680PTL (PETAL LOSS)C.G.S.X.
0.029e-136Triticum aestivumTaAffx.30541.1.S1_atCA624304--2e-20At5g61790calnexin 1 (CNX1)C.G.S.X.
0.023e-136Vitis vinifera1616549_atCF511455--4e+0At5g47060senescence-associated protein-relatedC.G.S.X.
0.016e+032Zea maysZm.9659.1.A1_atBM350799--4e-1At1g69510-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
XGO:0046621Any process that stops, prevents or reduces the frequency, rate or extent of growth of an organ of an organism.
XGO:0048441The process whose specific outcome is the progression of the petal over time, from its formation to the mature structure.
XGO:0048498The process that determines the orientation of petals with reference to the central axis.
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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