Gene omics information

Query gene ID At5g03260
Gene name LAC11 (laccase 11)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7586.9At5g03260831887LAC11 (laccase 11)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).S.X.H.G.
0.9296.0At5g19870832108unknown proteinF:unknown;P:unknown;C:endomembrane system;MPS.X.H.G.
0.9195.6At1g47410841146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8994.6At5g01930831699(1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAS.X.H.G.
0.8793.5At5g07080830599transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOS.X.H.G.
0.7989.1At4g08160826365glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing proteinEncodes a putative glycosyl hydrolase family 10 protein (xylanase).S.X.H.G.
0.7788.0At2g38320818412unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PMOS.X.H.G.
0.7687.4At4g35350829688XCP1 (XYLEM CYSTEINE PEPTIDASE 1)tracheary element vacuolar proteinS.X.H.G.
0.7586.9At1g10800837623unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.7486.1At1g58370842206RXF12Encodes a protein with xylanase activity.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
378.9100.0GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
198.2100.0GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
157.799.9GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
119.199.9GSM184920Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
116.999.9GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
112.999.9GSM184910Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
85.199.9GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
55.599.8GSM184921Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
49.099.8GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
47.499.8GSM184892Arabidopsis, root cells, columella root cap, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.107e-2099At5g58910836008LAC16 (laccase 16)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.092e-1791At5g01190831697LAC10 (laccase 10)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.111e-1275At2g38080818386IRX12 (IRREGULAR XYLEM 12)Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.C.G.S.X.
0.086e-859At5g60020836124LAC17 (laccase 17)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.112e-757At5g05390830421LAC12 (laccase 12)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.022e-757At5g48100834862TT10 (TRANSPARENT TESTA 10)Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.C.G.S.X.
0.052e-448At1g18140838393LAC1 (Laccase 1)putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).C.G.S.X.
0.025e-240At2g30210817571LAC3 (laccase 3)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.015e-240At1g73810843717unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.113e-1067Glycine maxGmaAffx.51444.2.S1_atBQ612052--2e-35At5g60020LAC17 (laccase 17)C.G.S.X.
0.022e+034Hordeum vulgareHS05I21u_atHS05I21u--4e+0At3g01322-C.G.S.X.
0.063e-552Oryza sativaOs01g0634500NM_192960.1--1e-12At2g38080IRX12 (IRREGULAR XYLEM 12)C.G.S.X.
0.302e-42174Populus trichocarpaPtpAffx.224436.1.S1_atpmrna42959hypothetical protein-1e-42At5g03260LAC11 (laccase 11)C.G.S.X.
0.051e-242Triticum aestivumTa.4455.2.S1_x_atBJ255523--3e-1At2g38080IRX12 (IRREGULAR XYLEM 12)C.G.S.X.
0.051e-963Vitis vinifera1607667_atCF212686hypothetical protein LOC100240808-3e-32At5g01190LAC10 (laccase 10)C.G.S.X.
0.016e+032Zea maysZm.17495.1.A1_atAI979723hypothetical protein LOC100279885-1e+0At3g29780RALFL27 (ralf-like 27)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0046274The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units.
LGO:0055114The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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