CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g03170

Gene name FLA11

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g03170 831914 FLA11 F:unknown;P:unknown;C:anchored to membrane;PBOMAF S.X. H.G.
0.98 97.8 At2g41610 818759 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.98 97.8 At3g50220 824184 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.98 97.8 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). S.X. H.G.
0.96 97.3 At1g27380 839627 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined. S.X. H.G.
0.96 97.3 At2g29130 817462 LAC2 (laccase 2) putative laccase, knockout mutant had reduced root elongation under PEG-induced dehydration S.X. H.G.
0.96 97.3 At5g15630 831417 IRX6 Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars. S.X. H.G.
0.96 97.3 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. S.X. H.G.
0.94 96.7 At1g09610 837488 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB S.X. H.G.
0.94 96.7 At4g27435 828852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
289.5 100.0 E-MEXP-265-raw-cel-414618491
253.2 100.0 E-MEXP-265-raw-cel-414618796
235.5 100.0 E-MEXP-265-raw-cel-414618291
229.7 100.0 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
226.0 100.0 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
199.2 100.0 E-MEXP-265-raw-cel-414618394
185.5 100.0 E-MEXP-265-raw-cel-414618693
180.8 100.0 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
174.4 100.0 E-MEXP-265-raw-cel-414618585
171.5 100.0 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-2 40 At3g19210 821455 ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases. Functions in DNA repair via homologous recombination. C.G. S.X.
0.02 2e-2 40 At2g42340 818835 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.01 9e-2 38 At5g15450 831398 CLPB3 (CASEIN LYTIC PROTEINASE B3) Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype. C.G. S.X.
0.02 9e-2 38 At5g05800 830465 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.09 9e-2 38 At5g60490 836170 FLA12 F:unknown;P:unknown;C:plasma membrane, anchored to membrane;PBOMAF C.G. S.X.
0.01 9e-2 38 At3g50240 824186 KICP-02 Encodes a kinesin-related protein. C.G. S.X.
0.02 9e-2 38 At2g26540 817195 HEMD F:uroporphyrinogen-III synthase activity;P:tetrapyrrole biosynthetic process, porphyrin biosynthetic process;C:chloroplast;BOPAF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Glycine max GmaAffx.26273.2.S1_at BM093168 - - 1e-67 At4g21710 NRPB2 C.G. S.X.
0.06 2e-4 46 Hordeum vulgare Contig7789_at Contig7789 - - 6e-4 At5g03170 FLA11 C.G. S.X.
0.02 7e-1 36 Oryza sativa Os01g0605700 AK099440.1 - MtN3 and saliva related transmembrane proteinfamily protein 3e-5 At5g62850 AtVEX1 (VEGETATIVE CELL EXPRESSED1) C.G. S.X.
0.07 2e-3 44 Populus trichocarpa Ptp.792.1.S1_s_at AY607763.1 hypothetical protein - 2e-3 At5g03170 FLA11 C.G. S.X.
0.06 2e+0 34 Triticum aestivum TaAffx.78902.1.S1_at CA724983 - - 9e-1 At5g03170 FLA11 C.G. S.X.
0.06 4e-1 34 Vitis vinifera 1617808_at CF568855 - - 1e+0 At5g03170 FLA11 C.G. S.X.
0.03 6e-1 34 Zea mays ZmAffx.496.1.A1_at AI691675 - - 8e-1 At5g48580 FKBP15-2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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