Gene omics information

Query gene ID At5g02940
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9998.1At5g02940831426-F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBS.X.H.G.
0.4253.9At5g13730831218SIG4 (SIGMA FACTOR 4)Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.S.X.H.G.
0.4253.9At3g26070822204plastid-lipid associated protein PAP / fibrillin family proteinF:structural molecule activity;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, plastoglobule;PBOS.X.H.G.
0.4152.4At5g35170833471adenylate kinase family proteinF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, adenylate kinase activity, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BOMFPAS.X.H.G.
0.3948.4At3g25690822157CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)actin binding protein required for normal chloroplast positioningS.X.H.G.
0.3846.7At1g66980843016protein kinase family protein / glycerophosphoryl diester phosphodiesterase family proteinF:kinase activity, glycerophosphodiester phosphodiesterase activity;P:protein amino acid phosphorylation, glycerol metabolic process, lipid metabolic process;C:unknown;MPOBFVAS.X.H.G.
0.3745.0At5g04360830315ATLDA (LIMIT DEXTRINASE)Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.S.X.H.G.
0.3745.0At4g10060826597catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BMPOAS.X.H.G.
0.3643.6At3g45140823650LOX2 (LIPOXYGENASE 2)Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection.S.X.H.G.
0.3541.6At3g61080825280fructosamine kinase family proteinF:kinase activity;P:biological_process unknown;C:mitochondrion, chloroplast;BOMFPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
49.799.8GSM131343AtGen_6-4311_Droughtstress-Shoots-3.0h_Rep1GSE5624AtGenExpress: Stress Treatments (Drought stress)
48.799.8GSM131147AtGen_B-33_3-5-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
46.399.8GSM131344AtGen_6-4312_Droughtstress-Shoots-3.0h_Rep2GSE5624AtGenExpress: Stress Treatments (Drought stress)
41.799.8GSM131135AtGen_B-21_2-7-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
40.699.8GSM131145AtGen_B-31_3-3-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
37.099.7GSM131121AtGen_B-7_1-7-1_REP_1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
36.699.7GSM131109AtGen_B-37_3-2-4_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
32.699.7E-ATMX-6-raw-cel-1308219150
32.399.7E-ATMX-6-raw-cel-1308219240
29.399.7E-MEXP-883-raw-cel-1697709994
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8501402At5g43745834395phosphotransferase-relatedF:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBC.G.S.X.
0.018e-240At5g28290832912ATNEK3 (NIMA-RELATED KINASE3)Encodes AtNek3, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.C.G.S.X.
0.018e-240At2g12875815766unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.013e-138At1g26090839150unknown proteinF:unknown;P:unknown;C:chloroplast, plastoglobule;BMOAFPC.G.S.X.
0.011e+036At4g23050828404protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVAC.G.S.X.
0.011e+036At4g26490828755-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e+036At3g25810822173myrcene/ocimene synthase, putativeF:in 7 functions;P:monoterpene biosynthetic process;C:plastid;POC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.165e-1997Glycine maxGma.10840.1.S1_atBE657473--2e-19At5g02940-C.G.S.X.
0.012e+034Hordeum vulgareContig25640_atContig25640--5e+0At4g39330CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9)C.G.S.X.
0.064e-861Oryza sativaOs03g0163100AK065571.1-Protein of unknown function DUF1012 family protein6e-6At5g43745phosphotransferase-relatedC.G.S.X.
0.199e-21103Populus trichocarpaPtpAffx.115782.1.S1_atCK319152hypothetical protein-3e-21At5g02940-C.G.S.X.
0.059e-1169Triticum aestivumTa.939.1.A1_atBG909212--9e-9At5g43745phosphotransferase-relatedC.G.S.X.
0.021e+034Vitis vinifera1622487_atCF215822hypothetical protein LOC100260885-5e-21At1g09610unknown proteinC.G.S.X.
0.015e-136Zea maysZm.1591.1.A1_atAY108754.1--5e-41At1g43710emb1075 (embryo defective 1075)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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