CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g02940

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.99 98.1 At5g02940 831426 - F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POB S.X. H.G.
0.42 53.9 At5g13730 831218 SIG4 (SIGMA FACTOR 4) Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity. S.X. H.G.
0.42 53.9 At3g26070 822204 plastid-lipid associated protein PAP / fibrillin family protein F:structural molecule activity;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, plastoglobule;PBO S.X. H.G.
0.41 52.4 At5g35170 833471 adenylate kinase family protein F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, adenylate kinase activity, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BOMFPA S.X. H.G.
0.39 48.4 At3g25690 822157 CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) actin binding protein required for normal chloroplast positioning S.X. H.G.
0.38 46.7 At1g66980 843016 protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein F:kinase activity, glycerophosphodiester phosphodiesterase activity;P:protein amino acid phosphorylation, glycerol metabolic process, lipid metabolic process;C:unknown;MPOBFVA S.X. H.G.
0.37 45.0 At5g04360 830315 ATLDA (LIMIT DEXTRINASE) Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process. S.X. H.G.
0.37 45.0 At4g10060 826597 catalytic/ glucosylceramidase F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BMPOA S.X. H.G.
0.36 43.6 At3g45140 823650 LOX2 (LIPOXYGENASE 2) Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. S.X. H.G.
0.35 41.6 At3g61080 825280 fructosamine kinase family protein F:kinase activity;P:biological_process unknown;C:mitochondrion, chloroplast;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.7 99.8 GSM131343 AtGen_6-4311_Droughtstress-Shoots-3.0h_Rep1 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
48.7 99.8 GSM131147 AtGen_B-33_3-5-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
46.3 99.8 GSM131344 AtGen_6-4312_Droughtstress-Shoots-3.0h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
41.7 99.8 GSM131135 AtGen_B-21_2-7-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
40.6 99.8 GSM131145 AtGen_B-31_3-3-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
37.0 99.7 GSM131121 AtGen_B-7_1-7-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
36.6 99.7 GSM131109 AtGen_B-37_3-2-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
32.6 99.7 E-ATMX-6-raw-cel-1308219150
32.3 99.7 E-ATMX-6-raw-cel-1308219240
29.3 99.7 E-MEXP-883-raw-cel-1697709994
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.85 0 1402 At5g43745 834395 phosphotransferase-related F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POB C.G. S.X.
0.01 8e-2 40 At5g28290 832912 ATNEK3 (NIMA-RELATED KINASE3) Encodes AtNek3, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. C.G. S.X.
0.01 8e-2 40 At2g12875 815766 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 3e-1 38 At1g26090 839150 unknown protein F:unknown;P:unknown;C:chloroplast, plastoglobule;BMOAFP C.G. S.X.
0.01 1e+0 36 At4g23050 828404 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVA C.G. S.X.
0.01 1e+0 36 At4g26490 828755 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 36 At3g25810 822173 myrcene/ocimene synthase, putative F:in 7 functions;P:monoterpene biosynthetic process;C:plastid;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 5e-19 97 Glycine max Gma.10840.1.S1_at BE657473 - - 2e-19 At5g02940 - C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig25640_at Contig25640 - - 5e+0 At4g39330 CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) C.G. S.X.
0.06 4e-8 61 Oryza sativa Os03g0163100 AK065571.1 - Protein of unknown function DUF1012 family protein 6e-6 At5g43745 phosphotransferase-related C.G. S.X.
0.19 9e-21 103 Populus trichocarpa PtpAffx.115782.1.S1_at CK319152 hypothetical protein - 3e-21 At5g02940 - C.G. S.X.
0.05 9e-11 69 Triticum aestivum Ta.939.1.A1_at BG909212 - - 9e-9 At5g43745 phosphotransferase-related C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1622487_at CF215822 hypothetical protein LOC100260885 - 5e-21 At1g09610 unknown protein C.G. S.X.
0.01 5e-1 36 Zea mays Zm.1591.1.A1_at AY108754.1 - - 5e-41 At1g43710 emb1075 (embryo defective 1075) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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