Gene omics information

Query gene ID At5g02830
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g02830831772pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAS.X.H.G.
0.5267.4At5g10470830911kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane, membrane, chloroplast envelope;MOFPBAVS.X.H.G.
0.5065.3At1g01790837332KEA1 (K EFFLUX ANTIPORTER 1)K efflux antiporter KEA1S.X.H.G.
0.4862.5At1g62750842573SCO1 (SNOWY COTYLEDON 1)Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants.S.X.H.G.
0.4862.5At1g17220838293FUG1 (fu-gaeri1)Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.S.X.H.G.
0.4659.8At1g71810843511ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAVS.X.H.G.
0.4558.3At3g48200823977unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOPS.X.H.G.
0.4457.2At4g28080828923bindingF:binding;P:unknown;C:unknown;MBFOPAVS.X.H.G.
0.4457.2At2g26080817149AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2)F:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine decarboxylation via glycine cleavage system, glycine metabolic process;C:mitochondrion, glycine cleavage complex, chloroplast, chloroplast envelope;OBFAMPS.X.H.G.
0.4457.2At2g32640817824unknown proteinF:unknown;P:unknown;C:chloroplast;BPOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
44.599.8E-ATMX-35-raw-cel-1574334912
36.399.7GSM131463AtGen_6-9511_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)
28.599.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.499.7E-ATMX-35-raw-cel-1574334896
25.399.6GSM131251AtGen_6-0511_Control-Shoots-12.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)
20.099.6GSM131375AtGen_6-5511_Genotoxicstress-Shoots-12.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
17.899.5GSM131464AtGen_6-9512_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)
17.699.5GSM131432AtGen_6-8512_Woundingstress-Shoots-12.0h_Rep2GSE5627AtGenExpress: Stress Treatments (Wounding stress)
16.599.5GSM131352AtGen_6-4512_Droughtstress-Shoots-12.0h_Rep2GSE5624AtGenExpress: Stress Treatments (Drought stress)
16.399.5GSM131256AtGen_6-0612_Control-Shoots-24.0h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-242At2g34510818014-F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBC.G.S.X.
0.018e-240At2g23460816878XLG1 (EXTRA-LARGE G-PROTEIN 1)encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits.C.G.S.X.
0.013e-138At4g05220825870harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e+036At5g65020836626ANNAT2 (Annexin Arabidopsis 2)Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. They may be involved in the Golgi-mediated secretion of polysaccharides.C.G.S.X.
0.011e+036At4g33450829482MYB69 (MYB DOMAIN PROTEIN 69)Member of the R2R3 factor gene family.C.G.S.X.
0.011e+036At3g23780821960NRPD2AThis gene encodes the second largest, catalytic subunit of the nuclear DNA-dependent RNA polymerase IV (aka RNA polymerase D). The NRPD2 protein is found at nuclear foci that overlap or are adjacent to chromocentromeres but are not fully coincident with chromocentromeres. The loss of NRPD2 leads to the loss of cytosine methylation at pericentromeric 5S genes and AtSN1 retroelements but has no discernible effect on centromere repeat methylation. This suggests that Pol IV primarily affects facultative heterochromatin rather than constitutive heterochromatin.C.G.S.X.
0.011e+036At3g17570821023F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.011e+036At2g38700818452MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1)Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis. The protein appears to form a homodimeric complex. Incidentally, it was shown that the Arabidopsis MVD protein could also interact with its yeast homolog to form a heterodimer.C.G.S.X.
0.011e+036At1g28690839769pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.112e-22109Glycine maxGmaAffx.26602.1.S1_atBE611206--2e-23At5g02830pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.013e+034Hordeum vulgareHW01N23u_atHW01N23u--2e-1At4g15830bindingC.G.S.X.
0.031e-244Oryza sativaOs03g0284900AK068146.1-Protein prenyltransferase domain containingprotein6e-3At5g02830pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.212e-28129Populus trichocarpaPtpAffx.219739.1.S1_atpmrna35763hypothetical protein-1e-28At5g02830pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.015e+034Triticum aestivumTaAffx.83051.1.S1_atCA662679--1e+0At1g10010AAP8C.G.S.X.
0.012e-240Vitis vinifera1607750_atCB347759--2e-5At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeC.G.S.X.
0.011e-138Zea maysZm.989.1.A1_atAI396095hypothetical protein LOC100193648-1e-1At1g80950phospholipid/glycerol acyltransferase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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