CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g02780

Gene name In2-1 protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At5g02780 831800 In2-1 protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA S.X. H.G.
0.73 85.5 At4g19690 827713 IRT1 (iron-regulated transporter 1) Fe(II) transport protein (IRT1) S.X. H.G.
0.73 85.5 At4g31940 829324 CYP82C4 member of CYP82C S.X. H.G.
0.67 81.6 At1g74770 843816 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB S.X. H.G.
0.61 76.7 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. S.X. H.G.
0.55 70.6 At1g74760 - - - S.X. H.G.
0.46 59.8 At3g61410 825313 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.38 46.7 At1g56160 842069 MYB72 (MYB DOMAIN PROTEIN 72) Encodes a member of the R2R3 transcription factor gene family that is involved in mediating induced systemic resistance. Genetic analysis of loss of function mutants and overexpressor lines indicates MYB72 is necessary but not sufficient for ISR.Interacts in vivo with EIL3. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
358.6 100.0 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
327.5 100.0 GSM265472 Arabidopsis, whole roots, -Fe, 48 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
310.1 100.0 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
308.7 100.0 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
297.2 100.0 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
289.7 100.0 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
161.0 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
140.3 99.9 GSM265470 Arabidopsis, whole roots, -Fe, 24 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
118.5 99.9 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
118.5 99.9 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 1e-59 230 At5g02790 831798 In2-1 protein, putative F:unknown;P:response to cadmium ion;C:unknown;PBMOFA C.G. S.X.
0.11 4e-4 46 At3g55040 824670 GSTL2 F:unknown;P:unknown;C:chloroplast, chloroplast stroma;PBMOF C.G. S.X.
0.02 3e-1 36 At5g61120 836233 - F:unknown;P:biological_process unknown;C:unknown;PMO C.G. S.X.
0.02 3e-1 36 At4g13430 826975 IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1) F:4 iron, 4 sulfur cluster binding, lyase activity, hydro-lyase activity;P:response to cadmium ion, metabolic process;C:chloroplast stroma, chloroplast;OBFMAP C.G. S.X.
0.01 3e-1 36 At2g41900 818790 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MOPFBVA C.G. S.X.
0.02 3e-1 36 At2g47180 819331 AtGolS1 (Arabidopsis thaliana galactinol synthase 1) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:response to high light intensity, response to hydrogen peroxide, carbohydrate biosynthetic process, response to heat;C:cellular_component unknown;PMFVBO C.G. S.X.
0.01 3e-1 36 At1g26760 839217 SDG35 (SET DOMAIN PROTEIN 35) F:binding;P:biological_process unknown;C:unknown;MFOPBAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 6e-10 65 Glycine max GmaAffx.92986.1.S1_s_at CF808711 In2-1 protein - 3e-10 At5g02780 In2-1 protein, putative C.G. S.X.
0.09 2e-4 46 Hordeum vulgare Contig3294_s_at Contig3294 - - 5e-4 At5g02780 In2-1 protein, putative C.G. S.X.
0.05 3e-3 44 Oryza sativa Os03g0283000 AY332468.1 - Glutathione S-transferase 2e+0 At5g02790 In2-1 protein, putative C.G. S.X.
0.21 1e-7 57 Populus trichocarpa PtpAffx.149231.1.S1_at CV237182 - - 2e-7 At5g02780 In2-1 protein, putative C.G. S.X.
0.11 4e-1 36 Triticum aestivum Ta.14570.1.S1_at BJ318968 - - 6e-1 At5g02780 In2-1 protein, putative C.G. S.X.
0.16 3e-5 48 Vitis vinifera 1606520_at CF212829 hypothetical protein LOC100261962 - 6e-10 At5g02790 In2-1 protein, putative C.G. S.X.
0.03 2e+0 32 Zea mays Zm.14934.1.A1_at CK986163 CHCH domain containing protein - 1e+0 At3g09032 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage