Gene omics information

Query gene ID At5g02540
Gene name short-chain dehydrogenase/reductase (SDR) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g02540831913short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAS.X.H.G.
0.4761.2At1g78170844153unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4152.4At5g13400831181proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFS.X.H.G.
0.3541.6At1g17840838363WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix.S.X.H.G.
0.3235.7At4g24510828553CER2 (ECERIFERUM 2)Involved in C28 to C30 fatty acid elongation.S.X.H.G.
0.3235.7At4g25960828702PGP2 (P-GLYCOPROTEIN 2)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVS.X.H.G.
0.3133.8At5g14410831292unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3032.1At2g46720819284KCS13 (3-KETOACYL-COA SYNTHASE 13)Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).S.X.H.G.
0.3032.1At1g64670842775BDG1 (BODYGUARD1)Encodes a epidermally expressed extracellular protein that likely functions as an alpha-beta hydrolase and is required for normal cuticle formation. Homozygous mutant plants are dwarfed and have abnormal leaves, collapsed cells, reduced numbers of trichomes. The specific role of BDG is unclear: it may function in cutin biosynthesis or as a cross-linking enzyme in the cell wall itself.S.X.H.G.
0.2830.3At2g26250817165KCS10 (3-KETOACYL-COA SYNTHASE 10)epidermis-specific, encodes KCS10, a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
253.0100.0E-MEXP-1443-raw-cel-1581869515
103.999.9E-MEXP-1299-raw-cel-1519903848
96.599.9GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
82.599.9E-MEXP-1299-raw-cel-1519902871
76.799.9GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
75.699.9GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
70.799.9E-MEXP-1299-raw-cel-1519902994
69.499.9GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
68.699.9GSM40552Total RNA, non-stressedGSE2218Changes in transcript abundance and association with large polysomes in response to hypoxia stress
66.899.8GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.256e-1375At2g37540818330short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAC.G.S.X.
0.075e-446At4g11410826745short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAC.G.S.X.
0.058e-342At4g23420828441short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAC.G.S.X.
0.031e-138At4g23430828442short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOMFPAC.G.S.X.
0.065e-136At5g50130835078short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAC.G.S.X.
0.015e-136At5g20380832160PHT4Encodes an inorganic phosphate transporter (PHT4;5).C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.101e-861Glycine maxGmaAffx.25220.1.S1_atBG881953--8e-10At2g37540short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.063e-1065Hordeum vulgareContig4531_atContig4531--1e-5At2g37540short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.044e-344Oryza sativaOs10g05479009638.m03624-Short-chain dehydrogenase Tic322e-3At5g02540short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.111e-552Populus trichocarpaPtpAffx.118928.1.S1_atDN500975hypothetical protein-1e-19At4g23420short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.061e-757Triticum aestivumTa.4018.1.S1_atCD888469--7e-4At2g37540short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.141e-550Vitis vinifera1619126_s_atCF515258hypothetical protein LOC100264493-1e-20At4g23420short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.079e-444Zea maysZm.17493.1.A1_atCK145178hypothetical protein LOC100272665-2e-3At5g02540short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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