CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g01990

Gene name auxin efflux carrier family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g01990 830729 auxin efflux carrier family protein F:auxin:hydrogen symporter activity;P:auxin polar transport;C:integral to membrane;FPOB S.X. H.G.
0.50 65.3 At1g71190 843459 SAG18 (SENESCENCE ASSOCIATED GENE 18) Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication. S.X. H.G.
0.44 57.2 At4g04860 825823 DER2.2 (DERLIN-2.2) F:unknown;P:proteolysis;C:cellular_component unknown;MOFP S.X. H.G.
0.43 55.3 At5g19050 832024 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;FOBMPV S.X. H.G.
0.42 53.9 At1g11020 837644 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV S.X. H.G.
0.40 50.8 At1g28200 839714 FIP1 (FH INTERACTING PROTEIN 1) VirF-interacting protein FIP1 S.X. H.G.
0.40 50.8 At5g02040 831904 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPF S.X. H.G.
0.37 45.0 At3g61790 825352 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF S.X. H.G.
0.37 45.0 At5g16550 831517 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.35 41.6 At3g10250 820187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.2 99.7 GSM131454 AtGen_6-9322_Heatstress-Roots-3.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
26.9 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.9 99.7 GSM131453 AtGen_6-9321_Heatstress-Roots-3.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
25.4 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.9 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.8 99.6 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.6 99.6 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.5 99.6 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
22.2 99.6 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.8 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-2 40 At5g18230 831941 transcription regulator NOT2/NOT3/NOT5 family protein F:transcription regulator activity;P:negative regulation of transcription, regulation of transcription;C:nucleus;MOFBPVA C.G. S.X.
0.02 2e-1 38 At5g49945 835058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFBP C.G. S.X.
0.01 6e-1 36 At5g15680 831422 binding F:binding;P:biological_process unknown;C:plasma membrane, membrane;MFPO C.G. S.X.
0.01 6e-1 36 At4g15080 827172 zinc finger (DHHC type) family protein F:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPB C.G. S.X.
0.02 6e-1 36 At3g23250 821904 MYB15 (MYB DOMAIN PROTEIN 15) Member of the R2R3 factor gene family. C.G. S.X.
0.02 6e-1 36 At3g28060 822430 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PBO C.G. S.X.
0.01 6e-1 36 At2g03330 814862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.02 6e-1 36 At1g68870 843219 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 4e-9 63 Glycine max GmaAffx.25445.1.S1_at AW156230 - - 9e-10 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.15 2e-11 69 Hordeum vulgare Contig5580_s_at Contig5580 - - 7e-11 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.17 1e-9 65 Oryza sativa Os05g0481900 AK119626.1 - Auxin Efflux Carrier family protein 1e-9 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.53 2e-57 224 Populus trichocarpa PtpAffx.219829.1.S1_at pmrna35973 hypothetical protein - 1e-57 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.11 8e-16 85 Triticum aestivum Ta.12796.1.S1_s_at BE430492 - - 8e-16 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.16 1e-14 79 Vitis vinifera 1611919_at CB919145 hypothetical protein LOC100246780 - 4e-14 At5g01990 auxin efflux carrier family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.18178.1.A1_at CN844931 - - 2e+0 At1g28610 GDSL-motif lipase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009926 The unidirectional movement of auxin in the stem from tip to base along the vector of gravity or basipetally.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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