Gene omics information

Query gene ID At5g01790
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g01790831868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.040.9At4g39800830139MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.S.X.H.G.
0.010.2At4g02630828217protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.000.0At1g18360838417hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOPMFVAS.X.H.G.
0.000.0At2g35620818130FEI2 (FEI 2)Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
212.7100.0GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
95.499.9GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
67.999.9GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
58.099.8GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
48.699.8GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
43.699.8GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
43.499.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
39.199.8GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
34.099.7GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
30.299.7GSM131689ATGE_77_EGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.023e-136At1g80330844373GA3OX4 (GIBBERELLIN 3-OXIDASE 4)Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29.C.G.S.X.
0.021e+034At5g037953770626-F:unknown;P:unknown;C:membrane;PMOBFC.G.S.X.
0.011e+034At2g37280818305PDR5 (PLEIOTROPIC DRUG RESISTANCE 5)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPVC.G.S.X.
0.031e+034At1g67035843023unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.021e+034At1g26160839157metal-dependent phosphohydrolase HD domain-containing proteinF:catalytic activity;P:biological_process unknown;C:chloroplast;BOMFAPC.G.S.X.
0.015e+032At5g20200832143nucleoporin-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPC.G.S.X.
0.015e+032At5g37060833677ATCHX24member of Putative Na+/H+ antiporter familyC.G.S.X.
0.015e+032At5g38530833841tryptophan synthase-relatedF:pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity;P:tryptophan biosynthetic process, metabolic process;C:unknown;BOAFPMC.G.S.X.
0.025e+032At5g50000835064protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+034Glycine maxGmaAffx.53702.1.S1_atBE804466--9e-1At5g01790unknown proteinC.G.S.X.
0.036e-134Hordeum vulgareHVSMEf0009L19r2_atHVSMEf0009L19r2--1e+0At5g35732unknown proteinC.G.S.X.
0.036e-136Oryza sativaOs05g0277500AK105351.1-Rhicadhesin receptor precursor (Germin-likeprotein)1e-1At1g09560GLP5 (GERMIN-LIKE PROTEIN 5)C.G.S.X.
0.034e-136Populus trichocarpaPtpAffx.1278.1.A1_s_atCV234571type-b response regulator-7e-9At2g25180ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12)C.G.S.X.
0.581e-154545Triticum aestivumTaAffx.26621.1.S1_atCA687056--9e-155At5g01790unknown proteinC.G.S.X.
0.036e+030Vitis vinifera1614190_atCF207712--4e-1At5g58090glycosyl hydrolase family 17 proteinC.G.S.X.
0.038e+030Zea maysZm.9599.1.A1_atBM333574--2e-1At1g27330-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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