CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g01790

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g01790 831868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.04 0.9 At4g39800 830139 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) ** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. S.X. H.G.
0.01 0.2 At4g02630 828217 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.00 0.0 At1g18360 838417 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOPMFVA S.X. H.G.
0.00 0.0 At2g35620 818130 FEI2 (FEI 2) Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
212.7 100.0 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
95.4 99.9 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
67.9 99.9 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
58.0 99.8 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
48.6 99.8 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
43.6 99.8 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
43.4 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
39.1 99.8 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
34.0 99.7 GSM147965 lec1-1 Globular Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
30.2 99.7 GSM131689 ATGE_77_E GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At1g80330 844373 GA3OX4 (GIBBERELLIN 3-OXIDASE 4) Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29. C.G. S.X.
0.02 1e+0 34 At5g03795 3770626 - F:unknown;P:unknown;C:membrane;PMOBF C.G. S.X.
0.01 1e+0 34 At2g37280 818305 PDR5 (PLEIOTROPIC DRUG RESISTANCE 5) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV C.G. S.X.
0.03 1e+0 34 At1g67035 843023 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e+0 34 At1g26160 839157 metal-dependent phosphohydrolase HD domain-containing protein F:catalytic activity;P:biological_process unknown;C:chloroplast;BOMFAP C.G. S.X.
0.01 5e+0 32 At5g20200 832143 nucleoporin-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBP C.G. S.X.
0.01 5e+0 32 At5g37060 833677 ATCHX24 member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 5e+0 32 At5g38530 833841 tryptophan synthase-related F:pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity;P:tryptophan biosynthetic process, metabolic process;C:unknown;BOAFPM C.G. S.X.
0.02 5e+0 32 At5g50000 835064 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Glycine max GmaAffx.53702.1.S1_at BE804466 - - 9e-1 At5g01790 unknown protein C.G. S.X.
0.03 6e-1 34 Hordeum vulgare HVSMEf0009L19r2_at HVSMEf0009L19r2 - - 1e+0 At5g35732 unknown protein C.G. S.X.
0.03 6e-1 36 Oryza sativa Os05g0277500 AK105351.1 - Rhicadhesin receptor precursor (Germin-likeprotein) 1e-1 At1g09560 GLP5 (GERMIN-LIKE PROTEIN 5) C.G. S.X.
0.03 4e-1 36 Populus trichocarpa PtpAffx.1278.1.A1_s_at CV234571 type-b response regulator - 7e-9 At2g25180 ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12) C.G. S.X.
0.58 1e-154 545 Triticum aestivum TaAffx.26621.1.S1_at CA687056 - - 9e-155 At5g01790 unknown protein C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1614190_at CF207712 - - 4e-1 At5g58090 glycosyl hydrolase family 17 protein C.G. S.X.
0.03 8e+0 30 Zea mays Zm.9599.1.A1_at BM333574 - - 2e-1 At1g27330 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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