CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g01550

Gene name LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.19 12.7 At5g01550 831700 LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1) Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. S.X. H.G.
0.33 38.1 At4g23280 828427 protein kinase, putative F:kinase activity;P:defense response;C:chloroplast;MPOBFVA S.X. H.G.
0.33 38.1 At5g65600 836686 legume lectin family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.22 17.5 At4g11170 826718 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:response to ozone, defense response;C:mitochondrion;PMBOFA S.X. H.G.
0.19 12.7 At1g26420 839184 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
134.7 99.9 E-MEXP-807-raw-cel-1173272948
114.0 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
111.6 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
106.7 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
95.8 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
80.8 99.9 GSM131111 AtGen_B-39_3-4-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
79.8 99.9 E-NASC-76-raw-cel-1359879132
76.3 99.9 E-MEXP-739-raw-cel-1099467375
71.8 99.9 E-MEXP-739-raw-cel-1099467393
69.2 99.9 GSM131139 AtGen_B-25_2-4-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 0 648 At5g01560 830345 LECRKA4.3 (LECTIN RECEPTOR KINASE A4.3) Encodes LecRKA4.3, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. C.G. S.X.
0.70 1e-160 567 At5g01540 831722 LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1) Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. C.G. S.X.
0.34 9e-26 119 At3g08870 820035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.04 3e-4 48 At2g37710 818348 RLK (receptor lectin kinase) Induced in response to Salicylic acid. C.G. S.X.
0.04 1e-3 46 At4g02410 828032 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 4e-3 44 At3g53810 824548 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e-2 42 At4g04960 825837 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.03 7e-2 40 At5g06740 830563 lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 7e-2 40 At4g24540 828556 AGL24 (AGAMOUS-LIKE 24) Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Glycine max GmaAffx.93259.1.S1_at CF808984 - - 1e+0 At1g23360 UbiE/COQ5 methyltransferase family protein C.G. S.X.
0.02 3e-2 40 Hordeum vulgare Contig25900_at Contig25900 - - 3e-1 At5g65240 kinase C.G. S.X.
0.03 9e-6 54 Oryza sativa OsAffx.28252.1.S1_at - - - 0 C.G. S.X.
0.04 2e-2 42 Populus trichocarpa PtpAffx.206327.1.S1_at pmrna12560 hypothetical protein - 2e-2 At5g01550 LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1) C.G. S.X.
0.02 2e-2 42 Triticum aestivum Ta.6870.3.S1_x_at CA696396 - - 1e-9 At5g56580 MKK6 (MAP KINASE KINASE 6) C.G. S.X.
0.03 5e+0 32 Vitis vinifera 1617287_at AY427196.1 - - 2e-17 At5g10530 lectin protein kinase, putative C.G. S.X.
0.01 2e+0 34 Zea mays Zm.14886.1.A1_at BM072766 - - 1e+0 At4g16765 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009738 A series of molecular signals mediated by the detection of abscisic acid.
X GO:0009845 The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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