Gene omics information

Query gene ID At5g01510
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At5g01510831819-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBS.X.H.G.
0.4761.2At2g31530817711EMB2289 (EMBRYO DEFECTIVE 2289)F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:embryonic development ending in seed dormancy, protein secretion;C:chloroplast, membrane;OBPAMS.X.H.G.
0.4253.9At1g71460843487pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFS.X.H.G.
0.4253.9At3g12210820401sequence-specific DNA bindingF:sequence-specific DNA binding;P:biological_process unknown;C:intracellular;MFPOAS.X.H.G.
0.4152.4At3g19570821494unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVAS.X.H.G.
0.4050.8At3g56830824850unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.4050.8At1g26090839150unknown proteinF:unknown;P:unknown;C:chloroplast, plastoglobule;BMOAFPS.X.H.G.
0.4050.8At2g05210815069AtPOT1a (Protection of Telomeres 1a)Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.S.X.H.G.
0.3948.4At1g78690844205phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:metabolic process;C:unknown;BMOFPS.X.H.G.
0.3745.0At2g39910818578bindingF:binding;P:biological_process unknown;C:unknown;MPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
89.599.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.499.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.799.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
75.899.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
75.299.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
73.299.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
71.999.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
69.499.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
69.199.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.299.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-138At5g07580830651DNA binding / transcription factorencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.C.G.S.X.
0.018e-136At5g60160836138aspartyl aminopeptidase, putativeF:aminopeptidase activity, zinc ion binding;P:response to cadmium ion, proteolysis;C:plasma membrane, vacuole;BOFMPAC.G.S.X.
0.018e-136At5g16170831475unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.018e-136At3g02510821100regulator of chromosome condensation (RCC1) family proteinF:chromatin binding, Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAVC.G.S.X.
0.018e-136At3g57520824919AtSIP2 (Arabidopsis thaliana seed imbibition 2)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAOC.G.S.X.
0.018e-136At3g25660822154glutamyl-tRNA(Gln) amidotransferase, putativeF:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:translation;C:chloroplast, chloroplast stroma;OBFMPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.052e-861Glycine maxGma.6875.2.S1_atBU763966--6e-9At5g01510-C.G.S.X.
0.039e-238Hordeum vulgarerbags1c09_atrbags1c09--5e+0At2g04420nucleic acid bindingC.G.S.X.
0.091e-22109Oryza sativaOs01g0141600AK066922.1-Protein of unknown function DUF647 family protein7e-23At5g01510-C.G.S.X.
0.214e-34147Populus trichocarpaPtpAffx.206312.1.S1_atpmrna12527hypothetical protein-4e-34At5g01510-C.G.S.X.
0.035e-240Triticum aestivumTa.3810.1.A1_x_atBJ247993--9e+0At4g15710unknown proteinC.G.S.X.
0.034e-342Vitis vinifera1620337_atCF213940similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel-2e-5At5g62500ATEB1B (END BINDING PROTEIN 1B)C.G.S.X.
0.023e-136Zea maysZm.8169.1.A1_atBM073140hypothetical protein LOC100277698-8e-6At4g17670senescence-associated protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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