Gene omics information

Query gene ID At5g01400
Gene name ESP4 (ENHANCED SILENCING PHENOTYPE 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g01400831597ESP4 (ENHANCED SILENCING PHENOTYPE 4)Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64.S.X.H.G.
0.5974.7At3g15120820743AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAVS.X.H.G.
0.5368.6At2g36720818244PHD finger transcription factor, putativeF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFOS.X.H.G.
0.4761.2At2g05230815071DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVS.X.H.G.
0.4457.2At2g46560819268transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;BFMOPS.X.H.G.
0.4253.9At5g49530835014SIN-like family proteinF:DNA-directed RNA polymerase activity;P:transcription;C:nucleus;MOFPBS.X.H.G.
0.4050.8At1g26170839158binding / protein transporterF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPOS.X.H.G.
0.3745.0At5g27970832867bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
0.3643.6At2g44950819104HUB1 (HISTONE MONO-UBIQUITINATION 1)The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.S.X.H.G.
0.3643.6At1g80930844433MIF4G domain-containing protein / MA3 domain-containing proteinF:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cytosol, nucleus;MOFBPVAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
117.299.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
111.699.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
89.999.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
84.199.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
82.199.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
73.699.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
69.599.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.099.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.399.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.199.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-242At5g01440831886insulin-degrading enzyme-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBC.G.S.X.
0.016e-138At5g46110834652APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)mutant has Altered acclimation responses; Chloroplast Triose Phosphate TranslocatorC.G.S.X.
0.016e-138At4g07380826169unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMC.G.S.X.
0.016e-138At2g21610816699pectinesterase family proteinF:pectinesterase activity;P:N-terminal protein myristoylation, cell wall modification;C:cell wall, plant-type cell wall;PBFAMOC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e-1689Glycine maxGmaAffx.38058.1.S1_atBU761285--2e-17At5g01400ESP4 (ENHANCED SILENCING PHENOTYPE 4)C.G.S.X.
0.037e-550Hordeum vulgareContig10523_atContig10523--2e-5At5g01400ESP4 (ENHANCED SILENCING PHENOTYPE 4)C.G.S.X.
0.031e-348Oryza sativaOs07g0693900AK065493.1-ARM repeat fold domain containing protein5e-4At5g01400ESP4 (ENHANCED SILENCING PHENOTYPE 4)C.G.S.X.
0.018e-138Populus trichocarpaPtpAffx.205019.1.S1_atpmrna9937hypothetical protein-1e-3At1g24650leucine-rich repeat family protein / protein kinase family proteinC.G.S.X.
0.012e-450Triticum aestivumTa.29360.1.A1_a_atBJ310055--3e-5At5g01400ESP4 (ENHANCED SILENCING PHENOTYPE 4)C.G.S.X.
0.017e-136Vitis vinifera1615518_atCB346390--6e+0Atcg01270-C.G.S.X.
0.014e+034Zea maysZm.2849.2.A1_atCF057194hypothetical protein LOC100193185-3e-24At1g06390GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006396Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
XGO:0035194Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage