CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g01370

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.83 91.4 At5g01370 831905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV S.X. H.G.
0.46 59.8 At4g31840 829313 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;P S.X. H.G.
0.45 58.3 At1g08560 837378 SYP111 (SYNTAXIN OF PLANTS 111) member of SYP11 Gene Family S.X. H.G.
0.35 41.6 At2g25060 817044 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P S.X. H.G.
0.33 38.1 At1g53140 841748 dynamin family protein Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis. S.X. H.G.
0.32 35.7 At2g26760 817217 CYCB1 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV S.X. H.G.
0.31 33.8 At3g51720 824335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAV S.X. H.G.
0.31 33.8 At1g18370 838418 HIK (HINKEL) Mutant has cytokinesis defects; seedling lethal S.X. H.G.
0.30 32.1 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.30 32.1 At3g12870 820470 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
332.2 100.0 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
236.1 100.0 GSM311289 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
154.7 99.9 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
96.0 99.9 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
84.1 99.9 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
54.3 99.8 GSM133772 Lindsey_1-24_torpedo-apical_Rep6_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
49.1 99.8 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
30.8 99.7 GSM131661 ATGE_29_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
30.7 99.7 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
30.6 99.7 GSM131663 ATGE_29_C2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-4 48 At1g75550 843891 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA C.G. S.X.
0.02 7e-4 46 At1g35830 840485 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFVB C.G. S.X.
0.01 3e-3 44 At5g48385 834893 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF C.G. S.X.
0.02 1e-2 42 At2g17420 816248 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) NADPH-dependent thioredoxin reductase, major cytosolic isoform C.G. S.X.
0.02 1e-2 42 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.02 4e-2 40 At5g46730 834716 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA C.G. S.X.
0.02 4e-2 40 At5g54030 835486 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-3 44 Glycine max GmaAffx.87271.1.S1_at BG789541 - - 2e-3 At1g75550 glycine-rich protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig19596_at Contig19596 - - 1e-1 At1g23980 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e-3 46 Oryza sativa Os.51735.1.S1_s_at - - - 0 C.G. S.X.
0.03 6e-5 50 Populus trichocarpa PtpAffx.207398.1.S1_at pmrna14680 hypothetical protein - 2e-2 At3g45160 unknown protein C.G. S.X.
0.03 2e-1 38 Triticum aestivum TaAffx.54566.1.S1_s_at CA679969 - - 8e-1 At2g27030 CAM5 (CALMODULIN 5) C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1619942_at CF568925 - - 3e+0 At3g57370 transcription factor IIB (TFIIB) family protein C.G. S.X.
0.03 1e+0 34 Zea mays ZmAffx.1083.1.A1_at AI974922 - - 1e+0 At1g59830 PP2A-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0010047 The process leading to the spontaneous opening of the fruit permitting the escape of seeds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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