Gene omics information

Query gene ID At5g01220
Gene name SQD2 (sulfoquinovosyldiacylglycerol 2)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2830.3At5g01220831888SQD2 (sulfoquinovosyldiacylglycerol 2)involved in sulfolipid biosynthesisS.X.H.G.
0.5773.8At3g02040821175SRG3 (senescence-related gene 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAVS.X.H.G.
0.4761.2At5g20790832202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.4659.8At3g05630819730PLDP2Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.S.X.H.G.
0.4457.2At5g20150832137SPX1 (SPX DOMAIN GENE 1)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBAS.X.H.G.
0.4355.3At2g32830817844PHT5phosphate transporterS.X.H.G.
0.3948.4At2g04460814986transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.3643.6At3g17790821047PAP17F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFAS.X.H.G.
0.3541.6At3g43110823370unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
182.8100.0GSM131065Hammond_2-6_pho1mutant_Rep3_ATH1GSE5611Differential gene expression patterns in the phosphate deficient mutant, pho 1
171.1100.0GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
135.699.9GSM131063Hammond_2-4_pho1mutant_Rep2_ATH1GSE5611Differential gene expression patterns in the phosphate deficient mutant, pho 1
114.299.9GSM133866Cain_1-1_WT1_Rep1_ATH1GSE5740Polycomb Binding Protein
95.699.9GSM133868Cain_1-2_WT1_Rep2_ATH1GSE5740Polycomb Binding Protein
92.099.9GSM133869Cain_1-4_CDB1-Knockout_Rep2_ATH1GSE5740Polycomb Binding Protein
72.699.9GSM133867Cain_1-3_CDB1-Knockout_Rep1_ATH1GSE5740Polycomb Binding Protein
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-240At1g10750837618unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;PFBC.G.S.X.
0.022e-138At2g20740816603-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;POC.G.S.X.
0.018e-136At5g61150836236VIP4 (VERNALIZATION INDEPENDENCE 4)Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.C.G.S.X.
0.028e-136At5g38490833837DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PC.G.S.X.
0.018e-136At5g25480832623DNMT2 (DNA METHYLTRANSFERASE-2)Encodes a DNA methyltransferase homolog. Human Dnmt2 methylates tRNA-Asp and can methylate Arabidopsis tRNA-Asp in vitro.C.G.S.X.
0.018e-136At5g41140834116unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.018e-136At5g34930833436arogenate dehydrogenaseF:binding, prephenate dehydrogenase (NADP+) activity, catalytic activity;P:tyrosine biosynthetic process, metabolic process;C:unknown;BOPAFMC.G.S.X.
0.018e-136At5g56160835715transporterF:transporter activity;P:transport;C:cellular_component unknown;MPFOAC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.273e-1997Glycine maxGma.10050.1.S1_atBE609142--2e-19At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)C.G.S.X.
0.137e-961Hordeum vulgareContig5344_atContig5344--2e-8At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)C.G.S.X.
0.143e-1171Oryza sativaOs07g0100300AK066040.1-Glycosyl transferase, group 1 domain containingprotein2e-11At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)C.G.S.X.
0.158e-1479Populus trichocarpaPtp.5041.2.S1_a_atBI126823hypothetical protein-3e-14At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)C.G.S.X.
0.093e-654Triticum aestivumTa.10498.1.S1_atBQ172328--3e-6At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)C.G.S.X.
0.022e-136Vitis vinifera1612461_atCB969270hypothetical protein LOC100257379-1e-1At3g10220tubulin folding cofactor BC.G.S.X.
0.103e-756Zea maysZm.11821.1.A1_atAY109049.1hypothetical protein LOC100192061-4e-7At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0016036A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate.
XGO:0009247The chemical reactions and pathways resulting in the formation of glycolipid, a compound containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid.
SGO:0046506The chemical reactions and pathways resulting in the formation of sulfolipid, a compound containing a sulfonic acid residue joined by a carbon-sulfur bond to a lipid.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00044Link to KaPPA-View 4Glycolipid biosynthesis(prokaryotic pathway)
00359Link to KaPPA-View 4Glucosyltransferase
00425Link to KaPPA-View 4Glycolipid biosynthesis(eukaryotic pathway)

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00561Link to KEGG PATHWAYGlycerolipid metabolism
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage