CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g01220

Gene name SQD2 (sulfoquinovosyldiacylglycerol 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.28 30.3 At5g01220 831888 SQD2 (sulfoquinovosyldiacylglycerol 2) involved in sulfolipid biosynthesis S.X. H.G.
0.57 73.8 At3g02040 821175 SRG3 (senescence-related gene 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV S.X. H.G.
0.47 61.2 At5g20790 832202 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.46 59.8 At3g05630 819730 PLDP2 Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. S.X. H.G.
0.44 57.2 At5g20150 832137 SPX1 (SPX DOMAIN GENE 1) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBA S.X. H.G.
0.43 55.3 At2g32830 817844 PHT5 phosphate transporter S.X. H.G.
0.39 48.4 At2g04460 814986 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.36 43.6 At3g17790 821047 PAP17 F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFA S.X. H.G.
0.35 41.6 At3g43110 823370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
187.1 100.0 E-MEXP-791-raw-cel-1122937569
182.8 100.0 GSM131065 Hammond_2-6_pho1mutant_Rep3_ATH1 GSE5611 Differential gene expression patterns in the phosphate deficient mutant, pho 1
171.1 100.0 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
154.1 99.9 E-MEXP-791-raw-cel-1122937533
135.6 99.9 GSM131063 Hammond_2-4_pho1mutant_Rep2_ATH1 GSE5611 Differential gene expression patterns in the phosphate deficient mutant, pho 1
114.2 99.9 GSM133866 Cain_1-1_WT1_Rep1_ATH1 GSE5740 Polycomb Binding Protein
95.6 99.9 GSM133868 Cain_1-2_WT1_Rep2_ATH1 GSE5740 Polycomb Binding Protein
92.0 99.9 GSM133869 Cain_1-4_CDB1-Knockout_Rep2_ATH1 GSE5740 Polycomb Binding Protein
80.1 99.9 E-MEXP-791-raw-cel-1122937551
72.6 99.9 GSM133867 Cain_1-3_CDB1-Knockout_Rep1_ATH1 GSE5740 Polycomb Binding Protein
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-2 40 At1g10750 837618 unknown protein F:unknown;P:N-terminal protein myristoylation;C:unknown;PFB C.G. S.X.
0.02 2e-1 38 At2g20740 816603 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PO C.G. S.X.
0.01 8e-1 36 At5g61150 836236 VIP4 (VERNALIZATION INDEPENDENCE 4) Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold. C.G. S.X.
0.02 8e-1 36 At5g38490 833837 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P C.G. S.X.
0.01 8e-1 36 At5g25480 832623 DNMT2 (DNA METHYLTRANSFERASE-2) Encodes a DNA methyltransferase homolog. Human Dnmt2 methylates tRNA-Asp and can methylate Arabidopsis tRNA-Asp in vitro. C.G. S.X.
0.01 8e-1 36 At5g41140 834116 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 8e-1 36 At5g34930 833436 arogenate dehydrogenase F:binding, prephenate dehydrogenase (NADP+) activity, catalytic activity;P:tyrosine biosynthetic process, metabolic process;C:unknown;BOPAFM C.G. S.X.
0.01 8e-1 36 At5g56160 835715 transporter F:transporter activity;P:transport;C:cellular_component unknown;MPFOA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 3e-19 97 Glycine max Gma.10050.1.S1_at BE609142 - - 2e-19 At5g01220 SQD2 (sulfoquinovosyldiacylglycerol 2) C.G. S.X.
0.13 7e-9 61 Hordeum vulgare Contig5344_at Contig5344 - - 2e-8 At5g01220 SQD2 (sulfoquinovosyldiacylglycerol 2) C.G. S.X.
0.14 3e-11 71 Oryza sativa Os07g0100300 AK066040.1 - Glycosyl transferase, group 1 domain containingprotein 2e-11 At5g01220 SQD2 (sulfoquinovosyldiacylglycerol 2) C.G. S.X.
0.15 8e-14 79 Populus trichocarpa Ptp.5041.2.S1_a_at BI126823 hypothetical protein - 3e-14 At5g01220 SQD2 (sulfoquinovosyldiacylglycerol 2) C.G. S.X.
0.09 3e-6 54 Triticum aestivum Ta.10498.1.S1_at BQ172328 - - 3e-6 At5g01220 SQD2 (sulfoquinovosyldiacylglycerol 2) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1612461_at CB969270 hypothetical protein LOC100257379 - 1e-1 At3g10220 tubulin folding cofactor B C.G. S.X.
0.10 3e-7 56 Zea mays Zm.11821.1.A1_at AY109049.1 hypothetical protein LOC100192061 - 4e-7 At5g01220 SQD2 (sulfoquinovosyldiacylglycerol 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0016036 A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate.
X GO:0009247 The chemical reactions and pathways resulting in the formation of glycolipid, a compound containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid.
S GO:0046506 The chemical reactions and pathways resulting in the formation of sulfolipid, a compound containing a sulfonic acid residue joined by a carbon-sulfur bond to a lipid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00044 Glycolipid biosynthesis(prokaryotic pathway)
00359 Glucosyltransferase
00425 Glycolipid biosynthesis(eukaryotic pathway)

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00561 Glycerolipid metabolism
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