Gene omics information

Query gene ID At5g01190
Gene name LAC10 (laccase 10)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8190.4At5g01190831697LAC10 (laccase 10)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).S.X.H.G.
0.9496.7At3g50220824184unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.9496.7At5g15630831417IRX6Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.S.X.H.G.
0.9396.4At1g27380839627RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.S.X.H.G.
0.9396.4At2g41610818759unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9396.4At5g17420831608IRX3 (IRREGULAR XYLEM 3)Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).S.X.H.G.
0.9195.6At2g29130817462LAC2 (laccase 2)putative laccase, knockout mutant had reduced root elongation under PEG-induced dehydrationS.X.H.G.
0.9195.6At5g67210836856unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.9195.6At3g16920820947chitinaseF:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOFS.X.H.G.
0.9095.1At4g28500828968ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
480.9100.0E-MEXP-265-raw-cel-414618693
326.5100.0E-MEXP-265-raw-cel-414618585
242.6100.0E-MEXP-265-raw-cel-414618796
200.3100.0E-MEXP-265-raw-cel-414617783
151.199.9E-MEXP-265-raw-cel-414617695
128.499.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
119.799.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
119.299.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
116.199.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
99.199.9E-MEXP-265-raw-cel-414617890
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.277e-23109At2g38080818386IRX12 (IRREGULAR XYLEM 12)Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.C.G.S.X.
0.092e-1791At5g03260831887LAC11 (laccase 11)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.132e-1481At5g58910836008LAC16 (laccase 16)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.069e-1065At1g18140838393LAC1 (Laccase 1)putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).C.G.S.X.
0.082e-757At5g05390830421LAC12 (laccase 12)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.039e-756At3g09220820078LAC7 (laccase 7)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.042e-448At5g09360830795LAC14 (laccase 14)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.042e-448At5g60020836124LAC17 (laccase 17)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.032e-448At2g40370818630LAC5 (laccase 5)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.095e-1273Glycine maxGmaAffx.46837.1.S1_atBU550919--2e-12At5g01190LAC10 (laccase 10)C.G.S.X.
0.042e+034Hordeum vulgareContig18837_atContig18837--3e-4At5g60020LAC17 (laccase 17)C.G.S.X.
0.073e-1171Oryza sativaOs11g0708100AK060544.1-Laccase (EC 1.10.3.2) (Fragment)1e-8At5g01190LAC10 (laccase 10)C.G.S.X.
0.154e-22107Populus trichocarpaPtpAffx.164036.1.S1_atY13769.1--3e-22At5g01190LAC10 (laccase 10)C.G.S.X.
0.052e-552Triticum aestivumTa.4048.1.S1_atBJ275846--3e-3At5g60020LAC17 (laccase 17)C.G.S.X.
0.132e-32139Vitis vinifera1607667_atCF212686hypothetical protein LOC100240808-3e-32At5g01190LAC10 (laccase 10)C.G.S.X.
0.011e+034Zea maysZm.3302.1.A1_atAY110608.1hypothetical protein LOC100276576-5e-1At5g04150BHLH101C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0046274The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units.
LGO:0055114The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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