Gene omics information

Query gene ID At5g01110
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At5g01110831824pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBAS.X.H.G.
0.6075.7At2g33680817933pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POFMBS.X.H.G.
0.5974.7At4g04370825757pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POFMS.X.H.G.
0.5773.8At1g06140837123pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFS.X.H.G.
0.5368.6At5g45790834619ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;PS.X.H.G.
0.5368.6At1g56570842111pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBS.X.H.G.
0.5065.3At4g07400826171VFB3 (VIER F-BOX PROTEINE 3)Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2,and 4. When levels of all 4 genes are reduced plants show defects in growth and reduced levels of auxin response genes.S.X.H.G.
0.5065.3At4g26680828775pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBAS.X.H.G.
0.4761.2At2g35030818067pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;POMFBAS.X.H.G.
0.4253.9At5g37570833735pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
523.5100.0GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
256.2100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
232.6100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
224.4100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
209.0100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
196.0100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
185.1100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
163.899.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
162.299.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
148.099.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.017e-550At1g63080842611pentatricopeptide (PPR) repeat-containing proteinTransacting siRNA generating locus. Is targeted by TAS2-derived ta-siR2140 for cleavage.C.G.S.X.
0.017e-550At1g63400842646pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.012e-242At1g62910842592pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMFBAC.G.S.X.
0.022e-242At1g63320842638pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POFMBAC.G.S.X.
0.022e-242At1g62670842564pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.017e-240At1g64580842766pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.013e-138At3g52860824452unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MFPOBC.G.S.X.
0.013e-138At2g22770816807NAI1regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica.C.G.S.X.
0.013e-138At1g31230840011AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I)Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e+036Glycine maxGmaAffx.15275.1.A1_atBU761115--1e-2At3g55790unknown proteinC.G.S.X.
0.022e+034Hordeum vulgareContig17533_atContig17533--2e-1At3g25011unknown proteinC.G.S.X.
0.049e-654Oryza sativaOs03g01651009631.m00620-TPR-like domain containing protein4e-6At5g01110pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.012e+036Populus trichocarpaPtpAffx.79585.2.S1_s_atCV245428--3e-1At4g21216unknown proteinC.G.S.X.
0.015e+034Triticum aestivumTaAffx.80105.1.S1_atCA702482--1e+0At3g50310MAPKKK20C.G.S.X.
0.028e-238Vitis vinifera1618028_atCF569218.1--4e+0At5g45973unknown proteinC.G.S.X.
0.012e+034Zea maysZm.4038.1.A1_atAI737071hypothetical protein LOC100274123-9e-5At1g75230HhH-GPD base excision DNA repair family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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