Gene omics information

Query gene ID At4g40090
Gene name AGP3 (arabinogalactan-protein 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g40090830172AGP3 (arabinogalactan-protein 3)F:unknown;P:multicellular organismal development;C:endomembrane system;PS.X.H.G.
0.9998.1At3g62680825442PRP3 (PROLINE-RICH PROTEIN 3)Proline-rich proteinS.X.H.G.
0.9697.3At5g67400836876peroxidase 73 (PER73) (P73) (PRXR11)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOS.X.H.G.
0.9697.3At4g26010828707peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOS.X.H.G.
0.9597.0At4g25820828687XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.S.X.H.G.
0.9597.0At4g25790828684allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVAS.X.H.G.
0.9597.0At5g35190833473proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAS.X.H.G.
0.9496.7At5g05500830433pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9396.4At4g02270828083pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9296.0At1g05240839237peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
183.7100.0GSM142751MJ001_ATH1_A2-jones-WT2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
166.1100.0GSM184837Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7GSE7639Expression analysis of root developmental zones after treatment with salt
146.799.9GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
102.899.9GSM142754MJ001_ATH1_A5-jones-WT-Rep3GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
92.099.9GSM184838Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8GSE7639Expression analysis of root developmental zones after treatment with salt
79.699.9E-MEXP-722-raw-cel-1062243559
70.999.9GSM133283RIKEN-GODA4A-MGSE5697AtGenExpress: Comparison of plant hormone-related mutants
70.899.9GSM133284RIKEN-GODA4B-MGSE5697AtGenExpress: Comparison of plant hormone-related mutants
69.899.9E-MEXP-722-raw-cel-1062243470
66.099.8GSM184845Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.225e-754At2g22470816779AGP2 (ARABINOGALACTAN PROTEIN 2)Encodes arabinogalactan-protein (AGP2).C.G.S.X.
0.021e-136At3g52370824402FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR)F:unknown;P:cell adhesion;C:endomembrane system;BOMPFAVC.G.S.X.
0.035e-134At4g03610825661unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFAC.G.S.X.
0.055e-134At2g21620816700RD2Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.C.G.S.X.
0.022e+032At5g67530836889peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein ubiquitination;C:ubiquitin ligase complex;OBMFPAC.G.S.X.
0.082e+032At5g65390836664AGP7F:unknown;P:unknown;C:anchored to membrane;BMOPFVAC.G.S.X.
0.032e+032At5g05090830391myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POC.G.S.X.
0.022e+032At5g47530834803auxin-responsive protein, putativeF:unknown;P:multicellular organismal development;C:membrane;PMFOBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.067e-134Glycine maxGma.16175.1.A1_atCD403188--7e-1At4g40090AGP3 (arabinogalactan-protein 3)C.G.S.X.
0.049e-132Hordeum vulgareHVSMEc0006P11r2_atHVSMEc0006P11r2--4e+0At4g40090AGP3 (arabinogalactan-protein 3)C.G.S.X.
0.041e+034Oryza sativaOs02g01436009630.m00425--1e+0At4g40090AGP3 (arabinogalactan-protein 3)C.G.S.X.
0.052e-136Populus trichocarpaPtpAffx.200294.1.S1_atpmrna584hypothetical protein-1e-2At3g24770CLE41 (CLAVATA3/ESR-RELATED 41)C.G.S.X.
0.052e+032Triticum aestivumTa.16354.1.S1_atCA605113--8e-4At2g41660MIZ1 (mizu-kussei 1)C.G.S.X.
0.049e+028Vitis vinifera1620258_atAY427195.1--2e-2At1g14370APK2A (PROTEIN KINASE 2A)C.G.S.X.
0.041e+128Zea maysZmAffx.728.1.A1_atAI740010hypothetical protein LOC100216633-3e+0At2g21180unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0007275The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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