Gene omics information

Query gene ID At4g39960
Gene name DNAJ heat shock family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g39960830157DNAJ heat shock family proteinF:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAVS.X.H.G.
0.6075.7At5g54180835506PTAC15 (PLASTID TRANSCRIPTIONALLY ACTIVE15)F:molecular_function unknown;P:biological_process unknown;C:plastid chromosome, chloroplast, nucleoid;PMOS.X.H.G.
0.5974.7At2g31170817673SYCO ARATHF:cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMAFPVS.X.H.G.
0.5873.8At1g01970839299pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMFS.X.H.G.
0.4761.2At1g70200843356RNA recognition motif (RRM)-containing proteinF:nucleic acid binding;P:unknown;C:chloroplast;MOFBPVAS.X.H.G.
0.4457.2At5g17710831638EMB1241 (embryo defective 1241)F:protein binding, chaperone binding, protein homodimerization activity, adenyl-nucleotide exchange factor activity;P:embryonic development ending in seed dormancy, protein folding;C:thylakoid, chloroplast, chloroplast stroma;BOMFPAVS.X.H.G.
0.4457.2At2g45770819185CPFTSYchloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP integration into isolated thylakoids.S.X.H.G.
0.4355.3At5g46580834701pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAS.X.H.G.
0.4355.3At5g14460831297pseudouridine synthase/ transporterF:pseudouridine synthase activity, transporter activity;P:tRNA processing, pseudouridine synthesis, RNA modification, tRNA pseudouridine synthesis;C:chloroplast;BOMFAPS.X.H.G.
0.4253.9At1g21600838761PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
45.199.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.299.7GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
21.599.6E-TABM-52-raw-cel-1583683070
20.299.6GSM284384Arabidopsis GEP5GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
16.399.5E-TABM-52-raw-cel-1583683038
15.999.5GSM311278Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
14.899.4GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
14.799.4GSM311277Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
13.599.4E-TABM-52-raw-cel-1583683646
13.399.4GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.762e-121436At2g22360816768DNAJ heat shock family proteinF:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAVC.G.S.X.
0.057e-446At4g02450828006glycine-rich proteinF:molecular_function unknown;P:unknown;C:plasma membrane;BMOPFVAC.G.S.X.
0.021e-242At3g08970820049ATERDJ3AJ domain protein localized in ER lumen. Can compensate for the growth defect in jem1 scj1 mutant yeast. Also shows similarity to HSP40 proteins and is induced by heat stress. At high temperatures, mutant alleles are not transmitted through the pollen due to defects in pollen tube growth.C.G.S.X.
0.054e-240At3g17830821051DNAJ heat shock family proteinF:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast;OBMFPAVC.G.S.X.
0.012e-138At1g80030844343DNAJ heat shock protein, putativeF:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAVC.G.S.X.
0.017e-136At3g61290825301-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOVC.G.S.X.
0.013e+034At5g23020832366IMS2 (2-ISOPROPYLMALATE SYNTHASE 2)methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.281e-1895Glycine maxGma.10069.1.S1_atBE658324--1e-18At4g39960DNAJ heat shock family proteinC.G.S.X.
0.149e-857Hordeum vulgareContig4763_atContig4763--3e-7At4g39960DNAJ heat shock family proteinC.G.S.X.
0.136e-654Oryza sativaOs05g0333500AB055405.1-Heat shock protein DnaJ family protein4e-6At4g39960DNAJ heat shock family proteinC.G.S.X.
0.279e-38159Populus trichocarpaPtpAffx.207101.1.S1_atpmrna14077hypothetical protein-6e-38At4g39960DNAJ heat shock family proteinC.G.S.X.
0.133e-963Triticum aestivumTaAffx.117057.1.S1_s_atCA719086--3e-9At4g39960DNAJ heat shock family proteinC.G.S.X.
0.102e-756Vitis vinifera1613745_s_atCF515836hypothetical protein LOC100257396 /// hypothetical protein LOC100268135-4e-4At2g22360DNAJ heat shock family proteinC.G.S.X.
0.072e-859Zea maysZm.1613.1.A1_atAI001332--1e-7At4g39960DNAJ heat shock family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
LGO:0009408A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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