CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g39950

Gene name CYP79B2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At4g39950 830154 CYP79B2 Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. S.X. H.G.
0.40 50.8 At2g22330 816765 CYP79B3 Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. S.X. H.G.
0.31 33.8 At2g38860 818470 YLS5 Encodes protease I (pfpI)-like protein YLS5. S.X. H.G.
0.20 14.4 At5g05730 830457 ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1) ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots. S.X. H.G.
0.02 0.4 At4g39940 830153 AKN2 (APS-kinase 2) adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
99.6 99.9 GSM216981 Vector_shoots_4h_GA4+DEX_repl2 GSE8741 DELLA protein direct targets in Arabidopsis
93.1 99.9 E-NASC-76-raw-cel-1359878976
87.7 99.9 E-NASC-76-raw-cel-1359879158
80.8 99.9 E-NASC-76-raw-cel-1359878900
73.7 99.9 GSM216973 Vector_shoots_4h_GA4+DEX_repl1 GSE8741 DELLA protein direct targets in Arabidopsis
55.2 99.8 GSM131160 AtGen_C-10_1-Pi-6_REP1_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
50.1 99.8 GSM131161 AtGen_C-11_2-Pi-6_REP2_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
43.1 99.8 GSM184151 ATR1_OE_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
42.3 99.8 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
37.6 99.7 E-MEXP-711-raw-cel-1563002902
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 0 926 At2g22330 816765 CYP79B3 Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. C.G. S.X.
0.04 6e-14 79 At1g79370 844275 CYP79C1 member of CYP79C C.G. S.X.
0.01 8e-1 36 At5g67360 836871 ARA12 Encodes a subtilisin-like serine protease essential for mucilage release from seed coats. C.G. S.X.
0.01 8e-1 36 At5g08230 830719 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 8e-1 36 At3g60470 825218 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 8e-1 36 At3g61120 825284 AGL13 (AGAMOUS-LIKE 13) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO C.G. S.X.
0.01 8e-1 36 At1g14040 837965 - F:unknown;P:unknown;C:integral to membrane;FMPO C.G. S.X.
0.01 3e+0 34 At5g17930 831661 binding / protein binding F:protein binding, binding;P:RNA metabolic process;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 3e+0 34 At5g57280 835833 methyltransferase F:methyltransferase activity;P:metabolic process;C:unknown;BOMFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+1 32 Glycine max PsAffx.psMA009xI04f_s_at PsAffx.psMA009xI04f - - 7e-1 At3g60720 PDLP8 (PLASMODESMATA-LOCATED PROTEIN 8) C.G. S.X.
0.06 6e-3 42 Hordeum vulgare Contig15164_at Contig15164 - - 8e-3 At4g39950 CYP79B2 C.G. S.X.
0.03 1e-4 50 Oryza sativa Os03g0570100 AK119569.1 - Cytochrome P450 79A1 (EC 1.14.13.41) (TyrosineN-monooxygenase) (Cytochrome P450Tyr) 9e-1 At5g35917 CYP79A3P C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.93149.2.S1_at CV231169 hypothetical protein - 6e-1 At3g27100 - C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.53146.1.S1_at CA696077 - - 3e-1 At3g17890 unknown protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1612875_at CB343256 similar to putative multidrug resistance-associated protein - 1e+1 At5g60460 sec61beta family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.9201.1.A1_at BM340120 hypothetical protein LOC100272902 - 6e+0 At5g62540 UBC3 (ubiquitin-conjugating enzyme 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0052544 Any process by which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
X GO:0009617 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
X GO:0009684 The chemical reactions and pathways resulting in the formation of indole-3-acetic acid, a compound which functions as a growth regulator in plants.
X GO:0006569 The chemical reactions and pathways resulting in the breakdown of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
S GO:0010120 The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00055 Auxin biosynthesis
00347 Cytochrome P450
00405 Glucosinolate biosynthesis from Trp, Phe, Leu and Val

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00380 Tryptophan metabolism
00966 Glucosinolate biosynthesis
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