Gene omics information

Query gene ID At4g39950
Gene name CYP79B2
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6075.7At4g39950830154CYP79B2Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.S.X.H.G.
0.4050.8At2g22330816765CYP79B3Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.S.X.H.G.
0.3133.8At2g38860818470YLS5Encodes protease I (pfpI)-like protein YLS5.S.X.H.G.
0.2014.4At5g05730830457ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.S.X.H.G.
0.020.4At4g39940830153AKN2 (APS-kinase 2)adenosine-5'-phosphosulfate-kinase (akn2) mRNA, completeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
99.699.9GSM216981Vector_shoots_4h_GA4+DEX_repl2GSE8741DELLA protein direct targets in Arabidopsis
93.199.9E-NASC-76-raw-cel-1359878976
87.799.9E-NASC-76-raw-cel-1359879158
80.899.9E-NASC-76-raw-cel-1359878900
73.799.9GSM216973Vector_shoots_4h_GA4+DEX_repl1GSE8741DELLA protein direct targets in Arabidopsis
55.299.8GSM131160AtGen_C-10_1-Pi-6_REP1_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
50.199.8GSM131161AtGen_C-11_2-Pi-6_REP2_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
43.199.8GSM184151ATR1_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
42.399.8GSM204026protoplast_control_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
37.699.7E-MEXP-711-raw-cel-1563002902
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.730926At2g22330816765CYP79B3Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.C.G.S.X.
0.046e-1479At1g79370844275CYP79C1member of CYP79CC.G.S.X.
0.018e-136At5g67360836871ARA12Encodes a subtilisin-like serine protease essential for mucilage release from seed coats.C.G.S.X.
0.018e-136At5g08230830719PWWP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.018e-136At3g60470825218unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.018e-136At3g61120825284AGL13 (AGAMOUS-LIKE 13)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOC.G.S.X.
0.018e-136At1g14040837965-F:unknown;P:unknown;C:integral to membrane;FMPOC.G.S.X.
0.013e+034At5g17930831661binding / protein bindingF:protein binding, binding;P:RNA metabolic process;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.023e+034At5g57280835833methyltransferaseF:methyltransferase activity;P:metabolic process;C:unknown;BOMFPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e+132Glycine maxPsAffx.psMA009xI04f_s_atPsAffx.psMA009xI04f--7e-1At3g60720PDLP8 (PLASMODESMATA-LOCATED PROTEIN 8)C.G.S.X.
0.066e-342Hordeum vulgareContig15164_atContig15164--8e-3At4g39950CYP79B2C.G.S.X.
0.031e-450Oryza sativaOs03g0570100AK119569.1-Cytochrome P450 79A1 (EC 1.14.13.41) (TyrosineN-monooxygenase) (Cytochrome P450Tyr)9e-1At5g35917CYP79A3PC.G.S.X.
0.025e+034Populus trichocarpaPtpAffx.93149.2.S1_atCV231169hypothetical protein-6e-1At3g27100-C.G.S.X.
0.023e+034Triticum aestivumTaAffx.53146.1.S1_atCA696077--3e-1At3g17890unknown proteinC.G.S.X.
0.024e+032Vitis vinifera1612875_atCB343256similar to putative multidrug resistance-associated protein-1e+1At5g60460sec61beta family proteinC.G.S.X.
0.021e+034Zea maysZm.9201.1.A1_atBM340120hypothetical protein LOC100272902-6e+0At5g62540UBC3 (ubiquitin-conjugating enzyme 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
XGO:0052544Any process by which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
XGO:0009617A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
XGO:0009684The chemical reactions and pathways resulting in the formation of indole-3-acetic acid, a compound which functions as a growth regulator in plants.
XGO:0006569The chemical reactions and pathways resulting in the breakdown of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
SGO:0010120The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00055Link to KaPPA-View 4Auxin biosynthesis
00347Link to KaPPA-View 4Cytochrome P450
00405Link to KaPPA-View 4Glucosinolate biosynthesis from Trp, Phe, Leu and Val



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00380Link to KEGG PATHWAYTryptophan metabolism
00966Link to KEGG PATHWAYGlucosinolate biosynthesis
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