Gene omics information

Query gene ID At4g39890
Gene name AtRABH1c (Arabidopsis Rab GTPase homolog H1c)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7687.4At4g39890830148AtRABH1c (Arabidopsis Rab GTPase homolog H1c)F:protein binding, GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endomembrane system;MOFPBVAS.X.H.G.
0.6478.9At1g72900843621disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMOS.X.H.G.
0.5673.0At4g33050829442EDA39 (embryo sac development arrest 39)F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFOS.X.H.G.
0.5570.6At2g15390816031FUT4Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.S.X.H.G.
0.5469.5At5g39670833963calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBS.X.H.G.
0.5469.5At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.S.X.H.G.
0.5469.5At3g22160821780VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBVS.X.H.G.
0.5267.4At5g52750835352heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMS.X.H.G.
0.5267.4At1g01560839523ATMPK11member of MAP KinaseS.X.H.G.
0.5166.3At4g14365827080zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
315.7100.0E-MEXP-509-raw-cel-829148703
129.499.9GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
105.399.9GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
75.199.9E-MEXP-807-raw-cel-1173273252
70.099.9GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
60.099.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
54.099.8E-MEXP-807-raw-cel-1173273170
49.699.8E-MEXP-807-raw-cel-1173273116
49.499.8E-MEXP-807-raw-cel-1173273060
45.699.8GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.564e-84311At2g22290816761ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:mitochondrion;MOFPBVAC.G.S.X.
0.555e-43174At5g10260830890AtRABH1e (Arabidopsis Rab GTPase homolog H1e)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVAC.G.S.X.
0.467e-30131At2g44610819069RAB6AEncodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant.C.G.S.X.
0.291e-963At5g64990836623AtRABH1a (Arabidopsis Rab GTPase homolog H1a)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:mitochondrion;MOFPBAVC.G.S.X.
0.045e-652At5g39620833958AtRABG1 (Arabidopsis Rab GTPase homolog G1)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVAC.G.S.X.
0.045e-652At1g52280841658AtRABG3d (Arabidopsis Rab GTPase homolog G3d)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole;MOFPBAVC.G.S.X.
0.043e-446At4g09720826558Ras-related GTP-binding protein, putativeF:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBAVC.G.S.X.
0.071e-344At3g09900820148ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.277e-34145Glycine maxGma.16367.1.S1_atBU083406--1e-51At5g10260AtRABH1e (Arabidopsis Rab GTPase homolog H1e)C.G.S.X.
0.251e-32139Hordeum vulgareContig7349_atContig7349--1e-66At2g44610RAB6AC.G.S.X.
0.355e-1789Oryza sativaOsAffx.16506.1.S1_at---0C.G.S.X.
0.354e-38159Populus trichocarpaPtpAffx.205177.1.S1_atpmrna10251hypothetical protein-4e-93At5g10260AtRABH1e (Arabidopsis Rab GTPase homolog H1e)C.G.S.X.
0.275e-28125Triticum aestivumTa.28749.1.S1_a_atCK213968--2e-59At2g44610RAB6AC.G.S.X.
0.362e-21101Vitis vinifera1621785_atCF213480hypothetical protein LOC100242004-2e-101At2g44610RAB6AC.G.S.X.
0.241e-2099Zea maysZm.8122.1.A1_atBM736458hypothetical protein LOC100274535-4e-73At2g44610RAB6AC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0007264Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
LGO:0015031The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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