Gene omics information

Query gene ID At4g39870
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5469.5At4g39870830146-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
0.7788.0At3g62660825440GATL7 (Galacturonosyltransferase-like 7)Encodes a protein with putative galacturonosyltransferase activity.S.X.H.G.
0.7486.1At1g06700837180serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.7385.5At4g20380827786zinc finger protein (LSD1)LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challengeS.X.H.G.
0.7385.5At5g47620834812heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBAS.X.H.G.
0.7385.5At3g57480824915zinc finger (C2H2 type, AN1-like) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFOPS.X.H.G.
0.7284.8At1g05960837106bindingF:binding;P:biological_process unknown;C:plasma membrane;MFPBOS.X.H.G.
0.7184.2At1g10660837609unknown proteinF:unknown;P:unknown;C:endomembrane system;PMFS.X.H.G.
0.7083.5At3g12620820442protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBVS.X.H.G.
0.7083.5At5g16480831509tyrosine specific protein phosphatase family proteinF:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FOPBMS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
98.599.9GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
93.299.9GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
90.799.9GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
82.999.9GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
78.699.9GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
64.799.8GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-240At3g07900819981unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
0.034e-240At2g27250817267CLV3 (CLAVATA3)One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis. Belongs to a large gene family called CLE for CLAVATA3/ESR-related. Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone. The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide. The functional form of CLV3 (MCLV3) is a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline. CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein. It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function.C.G.S.X.
0.016e-136At4g08180826368ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C)F:phosphoinositide binding, oxysterol binding;P:steroid metabolic process, signal transduction;C:cellular_component unknown;MFOPBC.G.S.X.
0.016e-136At3g57880824957C2 domain-containing proteinF:molecular_function unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOFC.G.S.X.
0.016e-136At2g03240814853-F:unknown;P:unknown;C:integral to membrane;MFPOC.G.S.X.
0.012e+034At5g53480835429importin beta-2, putativeF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, chloroplast, nuclear pore, cytoplasm;MFOPC.G.S.X.
0.012e+034At5g57050835809ABI2 (ABA INSENSITIVE 2)Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.075e-240Glycine maxGma.12040.1.S1_a_atCA783276--2e-2At4g39870-C.G.S.X.
0.055e-342Hordeum vulgareContig17097_atContig17097--8e-3At4g39870-C.G.S.X.
0.021e+036Oryza sativaOsAffx.25272.1.S1_at---0C.G.S.X.
0.134e-963Populus trichocarpaPtpAffx.63654.1.S1_atCV232034hypothetical protein-3e-9At4g39870-C.G.S.X.
0.036e-446Triticum aestivumTa.6324.1.S1_atCA681095--8e-4At4g39870-C.G.S.X.
0.045e-548Vitis vinifera1609316_atBQ795046hypothetical protein LOC100244322-1e-4At4g39870-C.G.S.X.
0.062e-240Zea maysZm.2673.1.S1_atCA401457TLD family protein-5e-2At4g39870-C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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